CB250245

Overview
NameCB250245
Unique NameCB250245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_STRU0 (Chaperone protein dnaK OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 98/239 (41.00%), Postives = 139/239 (58.16%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            +++++ V+EFK++N  D+S +  AL+RL+ A E+AK+ LS   QT I +  +  G    +    ++TRA+F++L  DL  +   PV + L DA +  S + +V+LVGGSTRIP V + ++    GKE  KS+NPDE           +++G+    V+D             ET GGV T LI RNTTIPT   QVFST +DNQP V I V +GER    DN  LG+F  + IP APRG
Sbjct:  205 KIIDYLVEEFKKENGIDLSQDKMALQRLKDAAEKAKKDLSGVTQTQISLPFITAGAAGPLHLEVSLTRAKFDDLTRDLVERTKVPVRRALSDAGLSLSEIDEVILVGGSTRIPAVVEAVKAE-TGKEPNKSVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRG 438          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_STRM5 (Chaperone protein dnaK OS=Stenotrophomonas maltophilia (strain R551-3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 101/239 (42.26%), Postives = 133/239 (55.65%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R++ + V+EF +    D+  +P AL+RL+ A ERAK  LSS  QT + +  +             +TRA+ E L  +L RK +EP    L DA +  S + +V+LVGG TR+PKVQQ + +FF GKE  K +NPDE           +L G+    V+D             ET GGV T +I +NTTIPTK  QVFST  DNQ  V + V +GER + R N  L KFD SGI PAPRG
Sbjct:  237 RVIEYLVEEFNKDQGIDLRKDPLALQRLKDAAERAKIELSSAQQTEVNLPYVTADASGPKHLNIKLTRAKLESLVEELIRKSIEPCRVALNDAGLRSSDISEVILVGGQTRMPKVQQAVTEFF-GKEPRKDVNPDEAVALGAAIQGGVLGGD----VKDVLLLDVTPLSLGIETMGGVFTKIIEKNTTIPTKASQVFSTAEDNQSAVTVHVLQGEREQARFNKSLAKFDLSGIEPAPRG 470          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_PROAC (Chaperone protein dnaK OS=Propionibacterium acnes GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 96/239 (40.17%), Postives = 138/239 (57.74%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R+V+  V +FK  N  D++ +  A +RL+ A ERAK  LS  ++T I +  +  G    +     +TRA F+ +  DL  +C  P    ++DA ++ S + +V+LVGGSTR+P V +L+++   GK+  K +NPDE           +L GE    V+D             ET GGVMT +I RNTTIPTK  +VF+T  DNQP V+IQV++GER   RDN  LG F+ +G+ PAPRG
Sbjct:  207 RIVDWLVTQFKNANGIDLAADKMAKQRLQEAAERAKIELSQASETHINLPYITAGAAGPLHLDEKLTRAEFQRMTSDLLERCRTPFNAVMKDAGLNVSQIDEVILVGGSTRMPAVAELVKELA-GKDPHKGVNPDEVVALGASLQAGVLKGE----VKDVLLLDVTPLSLGIETKGGVMTKIIERNTTIPTKRSEVFTTAEDNQPSVMIQVFQGEREFVRDNKSLGNFELTGLMPAPRG 440          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_PELPB (Chaperone protein dnaK OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 100/239 (41.84%), Postives = 138/239 (57.74%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEGIDFYT-TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            +++++   EFK++   D+  +   L+RL+ A E+AK  LSS   T I    I +  EG       +TRA+FE L  DLF K ++P  + ++++K++   + +VVLVGGSTRIPKVQ L++DFF GKE  KS+NPDE           +L G+    V D             ET GGVMT LI  NTTIPT+ ++VFST  DNQ  V + V +GER    DN  LG+F    IPP+PRG
Sbjct:  228 KIIDYIADEFKKQEGIDLRKDAITLQRLKEAAEKAKIELSSRTDTEINLPFITATQEGPKHLVINLTRAKFEALCADLFDKILDPCRRAIKNSKLEMKEIDEVVLVGGSTRIPKVQALVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VTDVLLLDVTPLSLGIETLGGVMTKLIDANTTIPTRKQEVFSTAGDNQTSVEVHVLQGERPMATDNKTLGRFHLGDIPPSPRG 461          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_PEDPA (Chaperone protein dnaK OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 99/239 (41.42%), Postives = 138/239 (57.74%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            ++++  V EFK+ N  D+S +  AL+RL+ A E+AK+ LS  ++  I +  +  G    +    T+TRA+F++L  DL  +   PVE  L+DA +  S + +V+L GGSTRIP VQ+ ++++  GKE   SINPDE           +L+G+    V+D             ET GGV T LI RNTTIPT   QVFST +DNQP V I V +GER    DN  LG+F  + IP APRG
Sbjct:  208 KIIDWLVDEFKKDNGVDLSQDKMALQRLKDAAEKAKKDLSGVSEAQISLPFISAGEAGPLHLEKTLTRAQFDQLTADLVERTKAPVENALKDAGLSASEIDEVILNGGSTRIPAVQEAVKNW-TGKEPNHSINPDEAVALGAAVQGGVLTGD----VKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRG 441          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_PARD8 (Chaperone protein dnaK OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 99/238 (41.60%), Postives = 139/238 (58.40%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY--EGIDFYT--TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            +++   +EF+R+   D+  +P AL+RL+ A E+AK  LSST  T I +  +    GI  +   T+TRA+FE+L   L + C+EP  + L+DA +  S + +V+LVGGSTRIP VQ +++ FF GK   K +NPDE           +L+GE    V+D             ET GGVMT LI  NTTIPTK  + F+T  DNQP V I + +GER+  +DN  +G+F   GIP A RG
Sbjct:  230 IIDWLAEEFEREEGVDLRKDPMALQRLKEAAEKAKIELSSTTSTEINLPYIMPVNGIPKHLVKTLTRAKFEQLADGLIQACIEPCRQSLKDAGLSTSDIDEVILVGGSTRIPAVQAIVEKFF-GKAPSKGVNPDEVVAVGAAIQGGVLTGE----VKDVLLLDVTPLSLGIETMGGVMTKLIESNTTIPTKKSETFTTAVDNQPSVEIHILQGERSLAKDNKSIGRFHLDGIPAAQRG 462          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_NITSB (Chaperone protein dnaK OS=Nitratiruptor sp. (strain SB155-2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 100/239 (41.84%), Postives = 135/239 (56.49%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R+++  V EFK++   D+  +  AL+RL+ A E AK+ LSS  +T I +  +             +TRA+FE L  DL  K +      L+D+ + K  V++VVLVGGSTRIP VQQ +++FF GKE  KS+NPDE           ++ G+    V+D             ET GGVMT +I + TTIP K  Q+FST  DNQP V I V +GER   +DN  LG+F   GIPPAPRG
Sbjct:  229 RIIDWLVDEFKKETGIDLKSDIMALQRLKEAAENAKKELSSAMETEINLPFITADQSGPKHLVKKLTRAKFESLIEDLVEKTITIANNVLKDSGLSKDEVNEVVLVGGSTRIPLVQQKVKEFF-GKEPNKSVNPDEVVAVGAAIQGAVIKGD----VKDVLLLDVTPLSLGIETLGGVMTKIIEKGTTIPVKKSQIFSTAEDNQPAVTIHVLQGEREMAKDNKSLGQFTLEGIPPAPRG 462          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_MANSM (Chaperone protein dnaK OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dnaK PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 102/239 (42.68%), Postives = 134/239 (56.07%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R++N+ V EFK++   D+  +P A++RL+ A E+AK  LSS  QT + +  +             +TRA+ E L  DL  + MEPV+  L DA +  S + DV+LVGG TR+P VQQ + +FF GKE  K +NPDE           +L+G     V D             ET GGVMT LI +NTTIPTK  QVFST  DNQ  V I V +GER +   N  LG+F+  GI PAPRG
Sbjct:  235 RVINYLVDEFKKEQGVDLRNDPLAMQRLKEAGEKAKIELSSAQQTDVNLPYITADATGPKHLNIKLTRAKLEALVEDLVARSMEPVKVALSDAGLSVSQIDDVILVGGQTRMPLVQQKVAEFF-GKEPRKDVNPDEAVAVGAAVQGGVLAGN----VTDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKQASANKSLGQFNLEGINPAPRG 468          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_LACSN (Chaperone protein dnaK OS=Lactobacillus sanfranciscensis GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 100/239 (41.84%), Postives = 138/239 (57.74%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            R++++ V EFK++N  D++ +  AL+RL+ A E+AK+ LS   QT I +  +       +   TT+TRA+F EL  DL  K   P E  L+DA +  S + +V+L GGSTRIP VQ+ ++++ +GKE   SINPDE           +L+G+    V+D             ET GGVMT LI +NTTIPT   Q FST +DNQ  V I V +GER    DN  LG+F  + IP APRG
Sbjct:  208 RIIDYLVAEFKKENGVDLAQDKMALQRLKDAAEKAKKELSGVNQTEISLPFIASNDNGPLHLQTTLTRAKFNELTHDLVEKTKIPFENALKDAGLSTSDIDEVILNGGSTRIPAVQEAVKEW-SGKEPNHSINPDEAVALGAAVQGGVLTGD----VKDVVLLDVTPLSLGIETMGGVMTKLIEKNTTIPTSKSQTFSTAADNQTAVDIHVLQGERPMAADNKSLGRFQLTDIPAAPRG 441          
BLAST of CB250245 vs. ExPASy Swiss-Prot
Match: DNAK_FLAJ1 (Chaperone protein dnaK OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=dnaK PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 97/238 (40.76%), Postives = 139/238 (58.40%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKNEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFDPSGIPPAPRG 707
            +++    EFK +   D+  +P +L+RL+ A E+AK  LSS+A+T I +  +             ++RA+FE+L+  L ++ MEPV K L+DA +  S + +V+LVGGSTR+P++   ++ FF GK+  K +NPDE           +LSG+    V+D             ET GGV+T LI  NTTIPTK  QVFST +D+QP V I V +GER    DN  +G+F   GIPPAPRG
Sbjct:  230 IIDWLADEFKTEEGIDLRLDPMSLQRLKEAAEKAKIELSSSAETEINLPYVTATASGPKHLVKKLSRAKFEQLSDTLVKRSMEPVAKALKDAGLSTSDIDEVILVGGSTRMPRIADEVEKFF-GKKASKGVNPDEVVAIGAAIQGGVLSGD----VKDVLLLDVTPLSLGIETMGGVLTKLIESNTTIPTKKSQVFSTAADSQPSVEIHVLQGERAMAADNKTIGRFHLDGIPPAPRG 462          
The following BLAST results are available for this feature:
BLAST of CB250245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_STRU03.233e-4241.00Chaperone protein dnaK OS=Streptococcus uberis (st... [more]
DNAK_STRM53.233e-4242.26Chaperone protein dnaK OS=Stenotrophomonas maltoph... [more]
DNAK_PROAC3.233e-4240.17Chaperone protein dnaK OS=Propionibacterium acnes ... [more]
DNAK_PELPB3.233e-4241.84Chaperone protein dnaK OS=Pelodictyon phaeoclathra... [more]
DNAK_PEDPA3.233e-4241.42Chaperone protein dnaK OS=Pediococcus pentosaceus ... [more]
DNAK_PARD83.233e-4241.60Chaperone protein dnaK OS=Parabacteroides distason... [more]
DNAK_NITSB3.233e-4241.84Chaperone protein dnaK OS=Nitratiruptor sp. (strai... [more]
DNAK_MANSM3.233e-4242.68Chaperone protein dnaK OS=Mannheimia succiniciprod... [more]
DNAK_LACSN3.233e-4241.84Chaperone protein dnaK OS=Lactobacillus sanfrancis... [more]
DNAK_FLAJ13.233e-4240.76Chaperone protein dnaK OS=Flavobacterium johnsonia... [more]

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Properties
Property NameValue
Genbank descriptionEST0007 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ007 similar to 70 kDa heat shock protein (acc# P27322), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250245 ID=CB250245; Name=CB250245; organism=Citrus sinensis; type=EST; length=709bp
ACAGAATGGTGAACCACTTTGTTCAAGAGTTCAAGAGGAAAAACAAGAAG
GATATTAGTGGAAACCCCAGAGCGTTGAGGAGGTTGAGAACCGCCTGTGA
AAGGGCTAAGAGGACCCTGTCATCAACTGCACAGACTACAATTGAGATTG
ATTCTTTATATGAGGGTATTGATTTCTACACAACCATTACAAGGGCTAGA
TTCGAAGAGTTGAACATGGATTTGTTCAGGAAGTGTATGGAGCCAGTGGA
GAAATGCCTGAGAGATGCTAAGATGGACAAGAGCAGTGTCCATGATGTGG
TTCTTGTTGGTGGGTCTACTAGGATCCCAAAAGTCCAGCAACTGTTGCAG
GACTTCTTCAATGGAAAAGAGCTATGCAAGAGCATCAACCCTGATGAAGC
GGTTGCCTACGGTGCTGCTGTGCAGGCTGCAATCTTGAGTGGTGAGGGTA
ATGAGAAGGTTCAGGACCTCTTATTGCTTGACGTCACCCCTCTATCGCTG
GGTTTGGAGACTGCTGGTGGAGTCATGACTGTGTTGATTCCAAGGAACAC
CACTATTCCAACCAAGAATGAGCAGGTGTTCTCCACATACTCTGACAACC
AGCCCGGGGTGTTGATCCAGGTCTACGAGGGTGAGCGCACAAGAACCCGT
GACAACAACTTGCTTGGAAAGTTTGATCCCTCTGGCATTCCTCCTGCTCC
AAGAGGGGT
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