CB250257

Overview
NameCB250257
Unique NameCB250257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig115 contig Csv1_Contig115:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR1_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 65/177 (36.72%), Postives = 97/177 (54.80%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSV----GPGAT-NLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNY-CPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLS 550
            NTDGI   +S  +TI  S I TGDD V++    G   T N+ I +   G GHG+SIGS     +  GV NVTV  +  TGT NG+RIKS  ++++G    + + + +M NV  PI+ID  Y   +  N P        SD+ ++DI  TS T+  V L+  +      +++++VKL+
Sbjct:  226 NTDGIDPMSSKNITIAHSNISTGDDNVAIKAYKGRSETRNISILHNEFGTGHGMSIGS-----ETMGVYNVTVDDLIMTGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDW------SDITFKDI--TSQTKGVVVLNGENAKKPIEVTMKNVKLT 388          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_PENJA (Polygalacturonase OS=Penicillium janthinellum PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 64/190 (33.68%), Postives = 102/190 (53.68%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNV-DNPIIIDQNYCPDNENCPG-QASGVKISDVIYQDIHG---TSATEVGVKL--DCSSRNPCTGISLEDVKLS--YNNQPAEASC 580
            NTDG  +  S+GVTI ++ +   DDC+++  G  N++     C  GHG+SIGS+G       V+NVT+T  T T + NGVRIK+    ++G   ++ F    ++ + D  I+I+Q+Y  +N +  G   SGV I+D+  + I G   + A EV +    D  S    +G+ +   + S    N P+ ASC
Sbjct:  187 NTDGFDISESTGVTIRNAVVKNQDDCIAINSG-QNIYFTGGTCSGGHGLSIGSVGGRDDNT-VKNVTITDSTVTDSANGVRIKT-VYDATGSVSDVTFSDITVSGITDYGIVIEQDY--ENGSPTGTPTSGVPITDLTVKGITGSVESDAVEVYILCGDDACSDWTWSGVDITSGQTSSKCENVPSGASC 371          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR2_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=pehA PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSV----GPGAT-NLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNY-CPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLS 550
            NTDGI   +S  +TI  S I TGDD V++    G   T N+ I +   G GHG+SIGS     +  GV NVTV  +   GT NG+RIKS  ++++G    + + + +M NV  PI+ID  Y   +  N P        SD+ ++D+  TS T+  V L+  +      +++++VKL+
Sbjct:  226 NTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDW------SDITFKDV--TSETKGVVVLNGENAKKPIEVTMKNVKLT 388          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR4_ASPNG (Polygalacturonase-4 OS=Aspergillus niger GN=pgaE PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 58/195 (29.74%), Postives = 100/195 (51.28%), Query Frame = 2
Query:   26 GDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKS-WGRTSSGFARNILFQHALMNNV-DNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGT-SATEVGVKLDCSSRNPCTGISLEDVKLS-------YNNQPAEASC 580
            G++ NTDG  +  S+ +TI  + +   DDCV+V  G  N++     C  GHG+SIGS+G       V+NVT        +QNGVRIK+ +G T  G    + ++   ++++ D  I+++QNY   +E+      G+ I D +  ++ G+  ++   + + C S + CT  +  DV ++         N P + SC
Sbjct:  192 GEAANTDGFDIGDSTYITITGANVYNQDDCVAVNSG-ENIYFSGGVCSGGHGLSIGSVGGRSDNT-VKNVTFYDSDIKSSQNGVRIKTIYGDT--GSVSEVTYKEITLSDITDYGIVVEQNYDDTSES---PTDGITIEDFVLDNVQGSVESSGTNIYIVCGS-DSCTDWTWTDVDVTGGKTSSDCENVPDDISC 378          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR2_ASPTU (Polygalacturonase-2 OS=Aspergillus tubingensis GN=pgaII PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 60/190 (31.58%), Postives = 98/190 (51.58%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNV-DNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGT-SATEVGVKLDCSSRNPCTGISLEDVKL-------SYNNQPAEASC 580
            NTD   V  S GV I+   +   DDC+++  G  N+W  +  C  GHG+SIGS+G       V+NVT+   T + ++N VRIK+    ++G    I + + +M+ + D  ++I Q+Y  D +      +GV I+DV  + + GT  +    + L C S   C+  + +DVK+       +  N P+ ASC
Sbjct:  178 NTDAFDVGNSVGVNIIKPWVHNQDDCLAINSGE-NIWFTSGTCIGGHGLSIGSVGGRSNNV-VKNVTIEHSTVSNSENAVRIKTVS-GATGSVSEITYSNIVMSGISDYGVVIQQDY-EDGKPTGKPTNGVTITDVKLESVTGTVDSKATDIYLLCGS-GSCSDWTWDDVKVTGGKKSTACKNYPSVASC 362          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR2_ASPNG (Endopolygalacturonase-2 OS=Aspergillus niger GN=pgaB PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 66/202 (32.67%), Postives = 103/202 (50.99%), Query Frame = 2
Query:   17 SAAGDSP---NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNV-DNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHG---TSATEVGVKLDCSSRNPCTGISLEDVKL-------SYNNQPAEASC 580
            +A GD+    NTD   V  S GV I+   +   DDC++V  G  N+W     C  GHG+SIGS+G       V+NVT+   T + ++N VRIK+    ++G    I + + +M+ + D  ++I Q+Y  D +      +GV I DV  + + G   + ATE  + L C S   C+  + +DVK+       +  N P+ ASC
Sbjct:  168 NADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGE-NIWFTGGTCIGGHGLSIGSVGDRSNNV-VKNVTIEHSTVSNSENAVRIKTIS-GATGSVSEITYSNIVMSGISDYGVVIQQDY-EDGKPTGKPTNGVTIQDVKLESVTGSVDSGATE--IYLLCGS-GSCSDWTWDDVKVTGGKKSTACKNFPSVASC 362          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_PENGR (Polygalacturonase OS=Penicillium griseoroseum GN=PGG1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 71/207 (34.30%), Postives = 105/207 (50.72%), Query Frame = 2
Query:    5 GVKVSAA-GDSP---NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKS-WGRTSSGFARNILFQHALMNNVDN-PIIIDQNYCPDNENCPG-QASGVKISDVIYQDIHGTSATE-VGVKLDCSSRNPCTGISLEDVKLSYNNQ-------PAEASC 580
            G+ V  A GDS    NTD   V +S+GV I    +   DDC++V  G TN+      C  GHGISIGS+G       V  VTV S T   + NGVRIK+ +G T  G  + + ++   ++ +    I+I+Q+Y  +N +  G   SGV I+D+   ++HGT A+  V   + C+S   C+  S   V ++           P+ ASC
Sbjct:  177 GITVDTADGDSNGGHNTDAFDVGSSNGVYITSPIVHNQDDCLAVNSG-TNVHFTGAQCTGGHGISIGSVGGRSDNT-VDGVTVESCTIKDSDNGVRIKTVYGAT--GTVQGVTYKDITLSGIAKYGIVIEQDY--ENGSPTGTPTSGVPITDLTLDNVHGTVASSGVDTYILCAS-GACSDWSWSGVSITGGQTSKKCKGIPSGASC 376          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR1_ASPAC (Polygalacturonase 1 OS=Aspergillus aculeatus GN=pga1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 58/190 (30.53%), Postives = 95/190 (50.00%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDN-PIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATE-VGVKLDCSSRNPCTGISLEDVKLS-------YNNQPAEASC 580
            NTD   +  S+ VTI  + +   DDCV+V  G  N++     C  GHG+SIGS+G       V+NVT    T   + NGVRIK+    ++G   ++ ++   + ++    I++ QNY  D  + P   +GV I+D +  ++HG+  +    + + C S   C+  +  DV +S         N P+ ASC
Sbjct:  196 NTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVGGRSDNT-VKNVTFVDSTIINSDNGVRIKT-NIDTTGSVSDVTYKDITLTSIAKYGIVVQQNY-GDTSSTP--TTGVPITDFVLDNVHGSVVSSGTNILISCGS-GSCSDWTWTDVSVSGGKTSSKCTNVPSGASC 378          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_PENEN (Polygalacturonase OS=Penicillium expansum GN=PEPG1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 52/174 (29.89%), Postives = 89/174 (51.15%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNP-IIIDQNYCPDNENCPGQ-ASGVKISDVIYQDIHGTSATE-VGVKLDCSSRNPCTGISLEDVKLS 550
            NTDG  +  S  +TI  + +   DDC+++  G TN+      C  GHG+SIGS+G       V+ V ++S     +QNGVR+K+    ++G  + + FQ   ++ + +  I I Q Y   N    G   +GV I+ +   ++HGT  ++   + ++C S   C+G +   V +S
Sbjct:  195 NTDGFDIGDSDSITITGATVYNQDDCLAINSG-TNIVFSGGYCSGGHGLSIGSVGGRSNNV-VETVHISSTQVVNSQNGVRVKAVS-GATGTIKGVTFQDITLSGITSQGITIRQEY--TNSGYTGSPTTGVPITGLTLNNVHGTVTSKGTDITIECGSSASCSGWTWTKVAVS 363          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_PENDI (Polygalacturonase OS=Penicillium digitatum GN=PG1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 65/190 (34.21%), Postives = 106/190 (55.79%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDN-PIIIDQNYCPDNENCPGQ-ASGVKISDVIYQDIHGT---SATEVGVKL-DCSSRN-PCTGISLEDVKLS--YNNQPAEASC 580
            NTD   V +S+ +TI ++ I   DDC+++  G +N+      C  GHGISIGS+G       V++VT++  T   + NGVR+K+  + ++G    + F +  ++N+    I+I+Q+Y  +N +  G+  +GV IS++  +++ GT   SATEV +   + S +N    G SL   K S    N PA ASC
Sbjct:  183 NTDAFDVGSSTFITISNANIKNQDDCLAINSG-SNIKFVGGTCSGGHGISIGSVGLRDNNI-VKDVTISDSTVINSDNGVRVKTIYQ-ATGAVSGVTFSNIKLSNIAKYGIVIEQDY--ENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAGNSLSGGKKSGKCGNVPAGASC 367          
The following BLAST results are available for this feature:
BLAST of CB250257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PGLR1_PECCC2.789e-1736.72Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR_PENJA1.808e-1633.68Polygalacturonase OS=Penicillium janthinellum PE=3... [more]
PGLR2_PECCC3.084e-1635.59Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR4_ASPNG6.871e-1629.74Polygalacturonase-4 OS=Aspergillus niger GN=pgaE P... [more]
PGLR2_ASPTU6.871e-1631.58Polygalacturonase-2 OS=Aspergillus tubingensis GN=... [more]
PGLR2_ASPNG1.999e-1532.67Endopolygalacturonase-2 OS=Aspergillus niger GN=pg... [more]
PGLR_PENGR2.611e-1534.30Polygalacturonase OS=Penicillium griseoroseum GN=P... [more]
PGLR1_ASPAC3.410e-1530.53Polygalacturonase 1 OS=Aspergillus aculeatus GN=pg... [more]
PGLR_PENEN1.296e-1429.89Polygalacturonase OS=Penicillium expansum GN=PEPG1... [more]
PGLR_PENDI1.296e-1434.21Polygalacturonase OS=Penicillium digitatum GN=PG1 ... [more]

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Properties
Property NameValue
Genbank descriptionEST0023 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ026 similar to polygalacturonase (acc# BAC22689), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250257 ID=CB250257; Name=CB250257; organism=Citrus sinensis; type=EST; length=715bp
ACAGGGGGTCAAAGTTTCGGCCGCCGGTGACAGCCCAAACACCGATGGCA
TTCATGTTCAAGCATCAAGTGGTGTCACAATTTTGGACAGCAAAATTGGG
ACTGGTGATGATTGTGTATCAGTTGGACCTGGCGCCACCAACTTATGGAT
TGAAAATGTTGCTTGTGGCCCAGGCCATGGGATCAGCATTGGCAGCTTAG
GCAAAGAGCAACAAGAGGCTGGAGTGCAAAATGTGACAGTAACATCTGTG
ACATTTACAGGCACTCAAAATGGAGTGAGGATTAAGTCCTGGGGGAGAAC
AAGCAGTGGATTTGCCAGGAACATTCTTTTCCAACATGCTCTTATGAACA
ATGTCGATAATCCAATCATAATTGATCAAAATTACTGCCCTGACAACGAG
AATTGTCCTGGACAGGCTTCGGGGGTTAAAATCAGTGATGTGATATATCA
AGATATTCATGGAACATCGGCAACGGAAGTTGGAGTAAAGCTCGATTGCA
GTTCAAGGAATCCATGCACTGGAATTAGCTTGGAGGATGTGAAGCTCAGT
TACAATAATCAACCAGCTGAAGCTTCCTGTGCCAACGCTGATGGATCGGC
CTCTGGATTTATTCTGCCAAATAGTTGCTTGAAGACTTGAAGACTTGGAG
TTGTGAAAAGTATTTGAGTAGGAAAAAAAGGCATAGGAAGCCGATCATGA
TTATATAGTTAGTAG
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