CB250257

Overview
NameCB250257
Unique NameCB250257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig115 contig Csv1_Contig115:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR1_ASPNG (Polygalacturonase-1 OS=Aspergillus niger GN=pgaA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 62/190 (32.63%), Postives = 99/190 (52.11%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNV-DNPIIIDQNYCPDNENCPGQAS-GVKISDVIYQDIHGT---SATEVGVKLDCSSRNPCT--GISLEDVKLS--YNNQPAEASC 580
            NTDG  +  S+GV I  + +   DDC+++  G  ++      C  GHG+SIGS+G       V+NVT++  T + + NGVRIK+  +  +G    I + +  ++ + D  I+I+Q+Y  +N +  G  S G+ I+DV    + GT    AT+V +     S +  T  G+ L   K S    N P+ ASC
Sbjct:  184 NTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCSGGHGLSIGSVGGRDDNT-VKNVTISDSTVSNSANGVRIKTIYK-ETGDVSEITYSNIQLSGITDYGIVIEQDY--ENGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDGSCSDWTWSGVDLSGGKTSDKCENVPSGASC 368          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_GIBFU (Polygalacturonase OS=Gibberella fujikuroi GN=PGA PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 57/182 (31.32%), Postives = 90/182 (49.45%), Query Frame = 2
Query:   23 AGDSPN-----------TDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDN-PIIIDQNYCPDNENCPGQ-ASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGIS 529
            AGD PN           TDG  + +S  VT+ ++ +   DDCV+V  G TN+ + N+ C  GHG+SIGS+G +     V  V   S     +QNG RIKS    ++G   N+ +Q+  + N+    + + Q+Y   N    G+  +GVKIS++ +  + GT A+             C+G +
Sbjct:  173 AGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVVSNMYCSGGHGLSIGSVGGKSDNV-VDGVQFLSSQVVNSQNGCRIKS-NSGATGTINNVTYQNIALTNISTYGVDVQQDYL--NGGPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFT 349          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLRA_ASPFL (Polygalacturonase A OS=Aspergillus flavus GN=pecA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 57/197 (28.93%), Postives = 103/197 (52.28%), Query Frame = 2
Query:   17 SAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDN-PIIIDQNYCPDNENCPG-QASGVKISDVIYQDIHGT---SATEVGVKLDCSSRNPCT--GISLEDVKLS--YNNQPAEASC 580
            +   +  NTD   V +S+ + I  + +   DDC+++  G+ ++   N  C  GHG+SIGS+G       V++VT+++     +QNGVRIK+    ++G   N+ F+   ++ +    +I++Q+Y  +N +  G   +G+K+SD+ +  + GT    AT++ +     S    T  G+S+   K S    N P  ASC
Sbjct:  172 AGTAEGHNTDAFDVGSSTYINIDGATVYNQDDCLAINSGS-HITFTNGYCDGGHGLSIGSVGGRSDNT-VEDVTISNSKVVNSQNGVRIKT-VYDATGTVSNVKFEDITLSGITKYGLIVEQDY--ENGSPTGTPTNGIKVSDITFDKVTGTVESDATDIYILCGSGSCTDWTWSGVSITGGKTSSKCENVPTGASC 363          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR3_ASPNG (Polygalacturonase-3 OS=Aspergillus niger GN=pgaC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 60/189 (31.75%), Postives = 93/189 (49.21%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGT----SATEVGVKLDCSSRN--PCTGISLEDVKLSYN--NQPAEASC 580
            NTDG  +  S+ +TI  ++I   DDCV++  G  N++     C  GHG+SIGS+G       V+NVT   V    +Q  +RIK+    +   +     + A  +  D  I+I+QNY  D    P   +GV I+D + ++I GT      TEV +     S +    TG+S+    +S +  N P+  SC
Sbjct:  198 NTDGFDIGESTYITITGAEIYNQDDCVAINSG-ENIYFSASVCSGGHGLSIGSVGGRDDNT-VKNVTFYDVNVLKSQQAIRIKTIYGDTGSVSEVTYHEIAFSDATDYGIVIEQNY-DDTSKTP--TTGVPITDFVLENIVGTCEDDDCTEVYIACGDGSCSDWTWTGVSVTGGSVSDDCLNVPSGISC 381          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLRB_ASPFL (Polygalacturonase B OS=Aspergillus flavus GN=pecB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 57/190 (30.00%), Postives = 93/190 (48.95%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNV-DNPIIIDQNYCPDNENCPGQ-ASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCT-----GISLEDVKLS--YNNQPAEASC 580
            NTD   V  S+GV I  + +   DDC+++  G  N+      C  GHGISIGS+G       V+NV V   T   + NG+RIK+    ++G    + +++  + N+  N I+I+ +Y   N    G+  +GV I+D+    + G+ A++         +  C+     G+S+   K S    N P+ ASC
Sbjct:  182 NTDAFDVSESNGVYITGANVKNQDDCLAINSG-ENIEFTGATCSGGHGISIGSIGNRDTNT-VKNVKVADSTVVDSDNGIRIKTIS-GATGSVSGVTYENITLKNIKKNGIVIELDY--KNGGPTGKPTTGVPITDLTVNGVTGSVASKATPVYILCGKGSCSDWTWKGVSISGGKKSDKCQNIPSGASC 366          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR1_COLLN (Endopolygalacturonase 1 OS=Colletotrichum lindemuthianum GN=PG1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 61/186 (32.80%), Postives = 100/186 (53.76%), Query Frame = 2
Query:   17 SAAGDSP---NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDN-PIIIDQNYCPDNENCPGQ-ASGVKISDVIYQDIHG---TSATEVGVKLDCSSRNPCTGISLEDVKLS 550
            ++AGDS    NTD   V +S+GV I  + +   DDC++V  G TN+      C  GHG+SIGS+G  +    V++V++T+     + NGVRIK+    ++G   +I +    ++N+    I+I+Q+Y  +N +  G+  SGV IS +    I G   +SAT V +     +    +G+S+   K S
Sbjct:  169 NSAGDSAGGHNTDAFDVGSSTGVYISGADVKNQDDCLAVNSG-TNITFTGGTCSGGHGLSIGSVGGRKDNV-VKSVSITNSKIINSDNGVRIKTVA-GATGPVSDITYSGITLSNIAKYGIVIEQDY--ENGSPTGKPTSGVPISGLTLSKISGSVSSSATPVYILCASCTNWKWSGVSVTGGKKS 349          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_ASPOR (Polygalacturonase OS=Aspergillus oryzae GN=AO090023000161 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 56/197 (28.43%), Postives = 102/197 (51.78%), Query Frame = 2
Query:   17 SAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDN-PIIIDQNYCPDNENCPG-QASGVKISDVIYQDIHGT---SATEVGVKLDCSSRNPCT--GISLEDVKLS--YNNQPAEASC 580
            +   +  NTD   V +S+ + I  + +   DDC+++  G+ ++   N  C  GHG+SIGS+G       V++VT+++     +QNGVRIK+    ++G   N+ F+   ++ +    +I++Q+Y  +N +  G   +G+K+SD+ +  + GT    AT++ +     S    T  G+S+   K S    N    ASC
Sbjct:  172 AGTAEGHNTDAFDVGSSTYINIDGATVYNQDDCLAINSGS-HITFTNGYCDGGHGLSIGSVGGRSDNT-VEDVTISNSKVVNSQNGVRIKT-VYDATGTVSNVKFEDITLSGITKYGLIVEQDY--ENGSPTGTPTNGIKVSDITFDKVTGTVESDATDIYILCGSGSCTDWTWSGVSITGGKTSSKCENVSTGASC 363          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR2_PENOL (Polygalacturonase 2 OS=Penicillium olsonii GN=PG2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 59/191 (30.89%), Postives = 98/191 (51.31%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDN-PIIIDQNYCPDNENCPG-QASGVKISDVIYQDIHGTSATE-VGVKLDCSSRNPCT-----GISLEDVKLS--YNNQPAEASC 580
            NTD   V +S+G+TI  + +   DDC++V  G T++      C  GHG+SIGS+G       V NV + +     + NGVRIK+    ++G  +N+ ++   ++ +    I+I+Q+Y  +N +  G    GV I+D+    + GT A+    V + C +   C+     G+S+   K S    N P+ ASC
Sbjct:  196 NTDAFDVGSSTGITITGATVYNQDDCLAVNSG-TDITFTGGLCSGGHGLSIGSVGGRSNN-DVANVIIENSQIQDSTNGVRIKT-VYEATGSVKNVTYKDITLSGITKYGIVIEQDY--ENGSPTGTPTDGVPITDLTLDGVKGTVASSGTNVYILC-AEGACSDWTWDGVSVSGGKTSSACENVPSSASC 380          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_ASPPA (Polygalacturonase OS=Aspergillus parasiticus GN=pecA PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 55/198 (27.78%), Postives = 103/198 (52.02%), Query Frame = 2
Query:   17 SAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKS-WGRTSSGFARNILFQHALMNNVDN-PIIIDQNYCPDNENCPG-QASGVKISDVIYQDIHGT---SATEVGVKLDCSSRNPCT--GISLEDVKLS--YNNQPAEASC 580
            +   +  NTD   + +S+ + I  + +   DDC+++  G+ ++   N  C  GHG+SIGS+G       V++VT+++     +QNGVRIK+ +G T  G   N+ F+   ++ +    ++++Q+Y  +N +  G   +G+ +S + ++ + GT    AT++ +     S    T  G+S+   K S    N P  ASC
Sbjct:  172 AGTAEGHNTDAFDIGSSTYINIDGATVYNQDDCLAINSGS-HITFTNGYCDGGHGLSIGSVGGRSDNT-VEDVTISNSKVVNSQNGVRIKTVYGAT--GTVSNVKFEDITLSGITKYGLVVEQDY--ENGSPTGTPTNGITVSGITFEKVTGTVESDATDIYILCGSGSCTDWTWSGVSITGGKTSSKCENVPTGASC 363          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR1_SCLSC (Endo-polygalacturonase OS=Sclerotinia sclerotiorum GN=PG1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 53/164 (32.32%), Postives = 90/164 (54.88%), Query Frame = 2
Query:   17 SAAGDS--PNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDN-PIIIDQNYCPDNENCPGQ-ASGVKISDVIYQDIHGT---SATEVGV 487
            ++AG+S   NTD   V +S+ +TI  + +   DDC+++  G T +      C  GHG+SIGS+G       V +V + S T   + NGVRIK+    ++G    + ++   ++ + +  ++I+Q+Y  +N +  G+  SGV I+ V   ++HGT   SAT V V
Sbjct:  190 NSAGNSLGHNTDAFDVGSSTDITISGANVQNQDDCLAINSG-TGITFTGGTCSGGHGLSIGSVGGRSDNV-VSDVIIESSTVKNSANGVRIKT-VLGATGSVSGVTYKDITLSGITSYGVVIEQDY--ENGSPTGKPTSGVPITGVTLSNVHGTVSSSATNVYV 348          
The following BLAST results are available for this feature:
BLAST of CB250257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PGLR1_ASPNG1.296e-1432.63Polygalacturonase-1 OS=Aspergillus niger GN=pgaA P... [more]
PGLR_GIBFU2.210e-1431.32Polygalacturonase OS=Gibberella fujikuroi GN=PGA P... [more]
PGLRA_ASPFL4.924e-1428.93Polygalacturonase A OS=Aspergillus flavus GN=pecA ... [more]
PGLR3_ASPNG4.924e-1431.75Polygalacturonase-3 OS=Aspergillus niger GN=pgaC P... [more]
PGLRB_ASPFL8.399e-1430.00Polygalacturonase B OS=Aspergillus flavus GN=pecB ... [more]
PGLR1_COLLN2.444e-1332.80Endopolygalacturonase 1 OS=Colletotrichum lindemut... [more]
PGLR_ASPOR4.168e-1328.43Polygalacturonase OS=Aspergillus oryzae GN=AO09002... [more]
PGLR2_PENOL4.168e-1330.89Polygalacturonase 2 OS=Penicillium olsonii GN=PG2 ... [more]
PGLR_ASPPA7.110e-1327.78Polygalacturonase OS=Aspergillus parasiticus GN=pe... [more]
PGLR1_SCLSC2.069e-1232.32Endo-polygalacturonase OS=Sclerotinia sclerotiorum... [more]

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Properties
Property NameValue
Genbank descriptionEST0023 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ026 similar to polygalacturonase (acc# BAC22689), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250257 ID=CB250257; Name=CB250257; organism=Citrus sinensis; type=EST; length=715bp
ACAGGGGGTCAAAGTTTCGGCCGCCGGTGACAGCCCAAACACCGATGGCA
TTCATGTTCAAGCATCAAGTGGTGTCACAATTTTGGACAGCAAAATTGGG
ACTGGTGATGATTGTGTATCAGTTGGACCTGGCGCCACCAACTTATGGAT
TGAAAATGTTGCTTGTGGCCCAGGCCATGGGATCAGCATTGGCAGCTTAG
GCAAAGAGCAACAAGAGGCTGGAGTGCAAAATGTGACAGTAACATCTGTG
ACATTTACAGGCACTCAAAATGGAGTGAGGATTAAGTCCTGGGGGAGAAC
AAGCAGTGGATTTGCCAGGAACATTCTTTTCCAACATGCTCTTATGAACA
ATGTCGATAATCCAATCATAATTGATCAAAATTACTGCCCTGACAACGAG
AATTGTCCTGGACAGGCTTCGGGGGTTAAAATCAGTGATGTGATATATCA
AGATATTCATGGAACATCGGCAACGGAAGTTGGAGTAAAGCTCGATTGCA
GTTCAAGGAATCCATGCACTGGAATTAGCTTGGAGGATGTGAAGCTCAGT
TACAATAATCAACCAGCTGAAGCTTCCTGTGCCAACGCTGATGGATCGGC
CTCTGGATTTATTCTGCCAAATAGTTGCTTGAAGACTTGAAGACTTGGAG
TTGTGAAAAGTATTTGAGTAGGAAAAAAAGGCATAGGAAGCCGATCATGA
TTATATAGTTAGTAG
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