CB250282 | Citrus Genome Database

Overview


Name	CB250282
Unique Name	CB250282
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	525

Libraries


Library Name	Type
Mature fruit abscission zone cDNA subtraction library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 47/168 (27.98%), Postives = 81/168 (48.21%), Query Frame = 1

Query:   22 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMNDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFKN 522
            +++ G+  +   +N L++  C+  + +KA  + D  M D   P   TY+ L+    +      A E+F ++V  G  PD+V    ++D  C  G +D A  ++K MD M   P    Y+ L+     E + E+A +   EM++ GI+ D   YN LI  + K    K+
Sbjct:  388 IREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKH 555

HSP 2 Score: 77.0258 bits (188), Expect = 5.961e-14
Identity = 55/194 (28.35%), Postives = 84/194 (43.30%), Query Frame = 1

Query:   22 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-----------------------------DSMVCQ---PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCK 504
            M +  +  N+  FN +++ LCK   ++KA+     M    I P   TY+ L++G+     +  AR I  EM   G  PD+ TY  ++  +C  GR  E L  +K +                             D MV Q   PT + Y+ L+H   +EN+IE A     E+ + GI  D   YN LI  +C+
Sbjct:  216 MYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQ 409

HSP 3 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 44/163 (26.99%), Postives = 80/163 (49.08%), Query Frame = 1

Query:   40 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFKNV 525
            T++   F+ L+   C+ + V +A E F  M ++ F P ++T + +L    +   +  A   + +M       ++ T+ IM++VLCK G++ +A G +  M+    +PT   Y+ LV  + +  RIE A     EM+  G Q D+  YN ++   C   +   V
Sbjct:  152 TKSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEV 314

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BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.392e-15
Identity = 42/162 (25.93%), Postives = 86/162 (53.09%), Query Frame = 1

Query:   55 AFNGLLSALCKSKNVRKAQEIFDCM------NDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFKN 522
            +F  L+ ALC+ K+V +A+E+  C       N   + ++K ++++L GW K     + +E +++M   G   D+ +Y I +D++CK+G+  +A+ + K M S   +     Y+ ++   G    +E  +  F EM + G + +VA +N +I   C+  + ++
Sbjct:  153 SFYNLVDALCEHKHVVEAEEL--CFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRD 312

HSP 2 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 41/160 (25.62%), Postives = 79/160 (49.38%), Query Frame = 1

Query:   22 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAF 498
            M   GVT++L +++  +  +CKS    KA +++  M  R +  D   Y+ ++   G    +     +FREM + GC P++ T+  ++ +LC+ GR+ +A  ++  M    CQP S  Y  L   +    +  + +  F  M ++G++  +  Y  L+  F
Sbjct:  215 MDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCL---FSRLEKPSEILSLFGRMIRSGVRPKMDTYVMLMRKF 371

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BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.042e-15
Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 1

Query:    1 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMV-CQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFKNV 525
            A++ F+ M +Y   + + + N LLSAL K   + K +E    +++   PD+ TY+IL+ G  +      A ++F EMV     P  VT+G ++  LCK  RV EAL +   M  +   +PT  IY+ L+        +  A     E  +  I+ D A+Y+ LI +  KA +   V
Sbjct:  102 ALHMFDEMPQYRCQRTVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEV 277

HSP 2 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 49/175 (28.00%), Postives = 83/175 (47.43%), Query Frame = 1

Query:    1 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFK 519
            A+  F+ M K  V      F  L+  LCK   V++A ++   M   +   P    Y+ L++   +   L  A ++  E  +     D   Y  ++  L KAGR +E   I++ M    C+P +  Y+VL++ + VEN  E A     EM + G++ DV  YN ++G F +  K++
Sbjct:  171 ALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWE 345

[Close]

BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP416_ARATH (Putative pentatricopeptide repeat-containing protein At5g43820 OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.042e-15
Identity = 38/171 (22.22%), Postives = 87/171 (50.88%), Query Frame = 1

Query:    1 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            A+  F   + +GV  +  +FN LL  LC+  +V  A+ +F+        DS +Y+I++ GW K   +    ++ +EMV++G  PD ++Y  +++ L + GR+++++ I  ++      P + +Y+ ++  +      ++++  +  M     + ++  Y+ L+    K  K
Sbjct:  205 AIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRK 375

[Close]

BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP217_ARATH (Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.197e-15
Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 1

Query:   34 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAF 498
            G   ++ A+N +L+ L K   V +A ++F+ M     P+  TY+IL++   +   L  A E+   M   G  P++ T  IMVD LCK+ ++DEA  + + MD  VC P    +  L+   G   R++DA   + +M  +  + +  +Y +LI  F
Sbjct:  338 GSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNF 492

HSP 2 Score: 78.5666 bits (192), Expect = 2.049e-14
Identity = 44/157 (28.03%), Postives = 82/157 (52.23%), Query Frame = 1

Query:   46 NLAAFNGLLSALCKSKNVRKAQEIFDCMNDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            +L   N  +  + K+    K + +F+ +  R F+PD+++YSIL+ G  K        E+F  M + GC  D   Y I++D  CK G+V++A  +++ M +   +PT   Y  ++      +R+++A   F E +   I+ +V +Y++LI  F K  +
Sbjct:  516 DLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672

HSP 3 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 45/168 (26.79%), Postives = 75/168 (44.64%), Query Frame = 1

Query:   13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            F  MQ+ G    +  F  L+    K   V  A  + D M    +  D   Y++ ++ +GK   +  A + F E+   G  PD VTY  M+ VLCKA R+DEA+ + + ++     P ++ Y+ ++  YG   + ++A          G    V  YN ++    K  K
Sbjct:  191 FQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 358

HSP 4 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 48/172 (27.91%), Postives = 82/172 (47.67%), Query Frame = 1

Query:    1 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            A+  F  M+K     NL+ +N L+  LC++  +  A E+ D M      P+ +T +I+++   K   L  A  +F EM    C PD +T+  ++D L K GRVD+A  + + M    C+  S +Y+ L+  +    R ED    + +M       D+ + N  +    KA +
Sbjct:  362 ALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGE 532

HSP 5 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 43/154 (27.92%), Postives = 84/154 (54.55%), Query Frame = 1

Query:   55 AFNGLLSALCKSKNVRKAQEIFDCMNDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            +++ L+  L K+    +  E+F  M ++  + D++ Y+I+++G+ K   + +A ++  EM   G  P +VTYG ++D L K  R+DEA  + +   S   +    IYS L+  +G   RI++A     E+ + G+  ++  +N+L+ A  KA +
Sbjct:  554 SYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEE 707

HSP 6 Score: 72.0182 bits (175), Expect = 1.918e-12
Identity = 41/163 (25.15%), Postives = 76/163 (46.63%), Query Frame = 1

Query:   22 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMNDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKA 507
            M+  G    +  +  ++  L K   + +A  +F+   + R   +   YS L++G+GK   +  A  I  E++  G  P++ T+  ++D L KA  ++EAL   +SM  + C P    Y +L++      +   A   + EM+K G++     Y  +I    KA
Sbjct:  613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKA 775

HSP 7 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 37/144 (25.69%), Postives = 71/144 (49.31%), Query Frame = 1

Query:   85 KSKNVRKAQEIFDCMND-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            K+  +R+  ++   M   +F P    Y+ L+  +    +      +F++M + G  P +  +  ++    K GRVD AL ++  M S        +Y+V + ++G   +++ A   F E+E NG++ D   Y ++IG  CKAN+
Sbjct:  145 KANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288

HSP 8 Score: 69.707 bits (169), Expect = 9.517e-12
Identity = 44/169 (26.04%), Postives = 75/169 (44.38%), Query Frame = 1

Query:   13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKF 516
            F  M++ G   +  A+N ++   CK   V KA ++ + M  + F P   TY  +++G  K   L  A  +F E        ++V Y  ++D   K GR+DEA  I++ +      P  + ++ L+        I +A+  F  M++     +   Y  LI   CK  KF
Sbjct:  575 FYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKF 743

HSP 9 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 38/168 (22.62%), Postives = 80/168 (47.62%), Query Frame = 1

Query:   13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMN-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            F+ ++  G+  +   +  ++  LCK+  + +A E+F+ +  +R +P +  Y+ ++ G+G       A  +       G  P ++ Y  ++  L K G+VDEAL + + M      P    Y++L+       +++ A +    M+K G+  +V   N ++   CK+ K
Sbjct:  261 FHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK 427

[Close]

BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP439_ARATH (Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana GN=At5g61370 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14
Identity = 49/185 (26.49%), Postives = 85/185 (45.95%), Query Frame = 1

Query:    1 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK-------AGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALI------GAFCKANK 513
            A+  F ++ K+   Q+      ++SALC   +V++A  +     D    +    Y  LL GW    N+  AR + ++M   G  PD+  +  ++  LC+       +G V EAL I+  M S   QPTS  Y++L+   G   R+ ++     +M+++G   D   Y  ++      G F K N+
Sbjct:  157 AIGIFKILDKFSCPQDGFTVTAIISALCSRGHVKRALGVMHHHKDVISGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQ 341

HSP 2 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 50/176 (28.41%), Postives = 86/176 (48.86%), Query Frame = 1

Query:   22 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQE---------IFDCMNDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQP-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFK 519
            M+  G+T +L  FN LL+ LC+ +NV +            + +  + +  P S +Y+ILL   G+   +  + +I  +M  +GC+PD  +Y  +V VL   GR  +   IV  M     +P   F Y ++    GVE R+  A+  F +M+++ +     +Y+ LI   CK   F+
Sbjct:  234 MKSAGITPDLFCFNSLLTCLCE-RNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRPERKFYYDLIGVLCGVE-RVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFE 407

[Close]

BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14
Identity = 46/169 (27.22%), Postives = 85/169 (50.30%), Query Frame = 1

Query:   13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKF 516
            F   + +GV  N  ++N L+ A C + ++  A ++F  M +R  +PD  +Y IL++G+ +   +  A E+  +M++ G  PD ++Y  +++ LC+  ++ EA  ++  M    C P    Y+ ++  +  E+R  DA     +M  NG   +   Y  LIG  C    F
Sbjct:  178 FKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMF 346

HSP 2 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 47/172 (27.33%), Postives = 74/172 (43.02%), Query Frame = 1

Query:    1 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-NDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            A   F  M +  V  ++ ++  L+   C+   V  A E+ D M N  F+PD  +Y+ LL    +   L  A ++   M   GCNPD+V Y  M+   C+  R  +A  ++  M S  C P S  Y  L+     +   ++      EM   G     ++ N L+  FC   K
Sbjct:  209 AYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGK 380

[Close]

BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14
Identity = 46/152 (30.26%), Postives = 76/152 (50.00%), Query Frame = 1

Query:    1 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 453
            A+ T N M++ G+  ++  +  L+  L ++ N+   +   D M      PD   Y++++ G+     L +A+E+FREM   G  P++ TY  M+  LC AG   EA  ++K M+S  C P   +YS LV       ++ +A     EM K G
Sbjct:  308 ALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKG 459

HSP 2 Score: 78.1814 bits (191), Expect = 2.676e-14
Identity = 48/172 (27.91%), Postives = 82/172 (47.67%), Query Frame = 1

Query:    7 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-NDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFK 519
            + +  M + G + ++  +N LL    +   + +   +FD M  D F PDS TY+ILL   GK      A      M + G +P ++ Y  ++D L +AG ++     +  M    C+P    Y+V++  Y V   ++ A + F EM   G   +V  YN++I   C A +F+
Sbjct:  240 WVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFR 411

[Close]

BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP194_ARATH (Pentatricopeptide repeat-containing protein At2g39230, mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14
Identity = 46/168 (27.38%), Postives = 86/168 (51.19%), Query Frame = 1

Query:   16 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--NDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            N M       N   +N +++ LCK     KA+E+   +    R+     +Y+ +++G+ K  +   A E +REM + G +P++VT+  +++  CK+ R+D AL +   M SM  +     Y  L+  +  +N ++ A   F E+ + G+  +V++YN+LI  F    K
Sbjct:  543 NQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGK 710

HSP 2 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 41/160 (25.62%), Postives = 83/160 (51.88%), Query Frame = 1

Query:   13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-NDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALI 489
            F+ + + G+  N++ +N L+S       +  A +++  M ND    D  TY+ +++G  KD N+  A +++ E++D G  PD + + ++V+ L K G+  +A  +++ M      P   +YS ++  +  E  + +A     EM + GI  D  ++N L+
Sbjct:  683 FSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLV 842

[Close]

BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PPR40_ARATH (Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.569e-14
Identity = 54/200 (27.00%), Postives = 86/200 (43.00%), Query Frame = 1

Query:   22 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD------------------------------------IVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKAN 510
            M+  G   ++ AFN  L  LC+   V  A + F CM  R   PD  +Y+IL+ G  +   +  A EI+  M+ +G +PD                                     V Y  ++   CKAGR+++A  +   M  + C+P    Y+VL++ Y   N ++ A     EM ++GIQ D   YN L+   C+ +
Sbjct:  105 METLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVS 304

HSP 2 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 39/157 (24.84%), Postives = 81/157 (51.59%), Query Frame = 1

Query:   46 NLAAFNGLLSALCKSKNVRKAQEIFDCMNDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            ++ +++ L+   C++ N RKA  +F+ M  +  + +  TY+ L++ + ++ N   A+++  +M + G +PD + Y  ++D LCK+G VD+A G+   M      P +  Y+ L+       R+ +A+  F +M+      D   +  +IG   +  K
Sbjct:  324 DVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKK 480

HSP 3 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 40/164 (24.39%), Postives = 79/164 (48.17%), Query Frame = 1

Query:   13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFC 501
            F  M++ G+  N+  +  L+ A  +  N   A+++ D M +  + PD   Y+ +L+   K  N+ +A  +F +M++    PD ++Y  ++  LC++GRV EA+ + + M    C P    +  ++       ++  A   + +M   G   D  + + LI A C
Sbjct:  348 FEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKASC 511

The following BLAST results are available for this feature:

BLAST of CB250282 vs. ExPASy Swiss-Prot

BLAST of CB250282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168


Match Name	E-value	Identity	Description
PP152_ARATH	3.161e-15	27.98	Pentatricopeptide repeat-containing protein At2g15...	[more]
PP136_ARATH	5.392e-15	25.93	Pentatricopeptide repeat-containing protein At1g80...	[more]
PPR79_ARATH	7.042e-15	30.68	Putative pentatricopeptide repeat-containing prote...	[more]
PP416_ARATH	7.042e-15	22.22	Putative pentatricopeptide repeat-containing prote...	[more]
PP217_ARATH	9.197e-15	30.32	Pentatricopeptide repeat-containing protein At3g06...	[more]
PP439_ARATH	1.201e-14	26.49	Pentatricopeptide repeat-containing protein At5g61...	[more]
PP298_ARATH	1.201e-14	27.22	Pentatricopeptide repeat-containing protein At4g01...	[more]
PP288_ARATH	1.201e-14	30.26	Pentatricopeptide repeat-containing protein At3g60...	[more]
PP194_ARATH	1.201e-14	27.38	Pentatricopeptide repeat-containing protein At2g39...	[more]
PPR40_ARATH	1.569e-14	27.00	Pentatricopeptide repeat-containing protein At1g13...	[more]

Pages

Properties


Property Name	Value
Genbank description	EST0058 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ074 similar to hypothetical Arabidopsis protein (acc# F96802), mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB250282 ID=CB250282; Name=CB250282; organism=Citrus sinensis; type=EST; length=525bp
GCAGTTTACACATTTAATGTCATGCAGAAATATGGCGTCACCCAAAATTT
AGCAGCATTCAATGGGCTACTGAGTGCTTTATGCAAGTCCAAGAATGTGA
GGAAGGCTCAGGAGATATTTGACTGTATGAATGATCGGTTCATTCCTGAC
TCAAAAACTTATAGTATACTACTTGAGGGGTGGGGAAAGGATCCAAATTT
GCCCAGGGCAAGAGAAATTTTCAGAGAAATGGTTGATACAGGCTGCAACC
CTGATATAGTAACCTATGGTATAATGGTTGACGTTCTCTGTAAGGCAGGG
CGGGTTGATGAAGCTCTTGGGATAGTCAAGTCGATGGATTCTATGGTTTG
TCAGCCAACTTCTTTCATCTATAGCGTTTTAGTTCATACATACGGGGTAG
AGAACCGGATTGAGGATGCTGTTGATACATTCTTAGAGATGGAGAAGAAT
GGAATTCAGGCTGATGTTGCAATGTATAATGCCTTGATTGGTGCCTTCTG
TAAAGCTAATAAATTCAAAAATGTG