CB250282

Overview
NameCB250282
Unique NameCB250282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP273_ARATH (Pentatricopeptide repeat-containing protein At3g49240 OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12
Identity = 40/165 (24.24%), Postives = 82/165 (49.70%), Query Frame = 1
Query:   37 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIPDSK------TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            V  +  A+N +L AL ++    +A ++FD +     P         T+++++ G+        A E+FR+M D  C+PD +++  +++ LC    + EA  +   M+    +P  + Y +L+ T   E +I++    +  M ++ ++ ++A+YN L     KA K
Sbjct:  306 VRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGKFEEAMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGK 470          

HSP 2 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 40/157 (25.48%), Postives = 77/157 (49.04%), Query Frame = 1
Query:   46 NLAAFNGLLSALCKSKNVRKAQEIFDCMND-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513
            NL  FN +++  C      +A E+F  M D +  PD+ +++ L+     +  L  A +++ EM +    PD  TYG+++D   K G++DE     K+M     +P   +Y+ L        +++DA  +F +M  + ++ D   Y  ++ A  +A +
Sbjct:  349 NLGTFNVMVNGYCAGGKFEEAMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDA-KSFFDMMVSKLKMDDEAYKFIMRALSEAGR 504          
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP269_ARATH (Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12
Identity = 53/172 (30.81%), Postives = 82/172 (47.67%), Query Frame = 1
Query:   13 FNVMQKY---GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-NDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-GIQADVAMYNALIGAFCKANK 513
            F V +KY   G + + A ++G+  +L       +A+EI   M N  + PD+ TYS L+ G  K   L  AR +  +M   GC PDI T+ I++   CK   +D+AL    +M        S +  VL+  + + N+ E A    +EM KN  ++   + Y  LI    K  K
Sbjct:  355 FRVSRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEKGFDIDSNLLDVLIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKK 526          
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP132_ARATH (Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12
Identity = 39/170 (22.94%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFK 519
            F   Q+ G   +   +N L+          KA EI++ M     + D  TY +++    K   L  A ++F++M +    P    +  +VD + KAGR+D ++ +   M     +P++ ++  L+ +Y    +++ A+  + EM+K+G + +  +Y  +I +  K+ K +
Sbjct:  266 FKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLE 435          
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP162_ARATH (Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 47/172 (27.33%), Postives = 83/172 (48.26%), Query Frame = 1
Query:    1 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRF---IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVEN--RIEDAVDTFLEMEKNGIQADVAMYNALIGAFC 501
            A+  F  M K G  + + +FN LL+A   S    +  ++FD    R+    PD  +Y +L++ +       +A EI R+M   G    I+ +  ++  L K G VDEA  +   M +  C   + +Y+V +     E+  R+++ ++   EM   G++ D   YN L+ A+C
Sbjct:  121 AMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAAKESPERVKELME---EMSSVGLKPDTVSYNYLMTAYC 289          
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP164_ARATH (Pentatricopeptide repeat-containing protein At2g19280 OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 45/164 (27.44%), Postives = 75/164 (45.73%), Query Frame = 1
Query:   13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFC 501
            F  M+  G+  ++  +N L+    K+  + K  E+ D M    I PD  TY+IL+        +  A EI  E++  G  P  + +  ++    K G   EA  +   M  +  +P     S L+H Y    R+E A+  F ++   G++ DV +YN LI  +C
Sbjct:  466 FRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYC 629          

HSP 2 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 44/169 (26.04%), Postives = 78/169 (46.15%), Query Frame = 1
Query:   22 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMND-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFKNV 525
            ++ +G++Q+  + + ++   CK   V K +E    ++  R  P+   YS  L       ++ RA  IF+E+ + G  PD V Y  M+D  C  GR D+A     ++      P+    ++L+        I DA   F  M+  G++ DV  YN L+  + K ++   V
Sbjct:  332 LKLFGISQDSVSVSSVIDGFCK---VGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKV 497          

HSP 3 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 41/170 (24.12%), Postives = 80/170 (47.06%), Query Frame = 1
Query:   13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFK 519
            F  + K G   +L     L+ A  +  ++  A+ +F  M    +  D  TY+ L+ G+GK   L +  E+  EM   G +PD+ TY I++  +   G +DEA  I+  +      P++  ++ ++  +      ++A   +  M    ++ DV   +AL+  +CKA + +
Sbjct:  431 FGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRME 600          
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP366_ARATH (Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 38/156 (24.36%), Postives = 76/156 (48.72%), Query Frame = 1
Query:   58 FNGLLSALCKSKNVRKAQEIFDCMNDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFKNV 525
            F  L+  LC++  +  A EI D M  R + DS  Y I++ G+ +  ++ +A E F  +  +G  P + TY  ++  L K  + ++   +   M     +P S   + +V  +  +NR+ +A   F  ME+ GI+     Y+  +   C+++++  +
Sbjct:  367 FEILVKGLCRANRMVDALEIVDIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNEMIENGIEPDSVAITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSYSIFVKELCRSSRYDEI 522          
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PPR56_ARATH (Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 44/169 (26.04%), Postives = 81/169 (47.93%), Query Frame = 1
Query:   13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKF 516
            +  M ++G+   +  FN +L +  K+ ++ +  +I+  M  R I  S+ TY+IL+ G+ K+  +  AR    +M  +G      ++  +++  CK G  D+A G+   M +    PT+  Y++ +       RI+DA +    M       DV  YN L+  + K  KF
Sbjct:  226 YETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM----AAPDVVSYNTLMHGYIKMGKF 390          
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP226_ARATH (Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 37/166 (22.29%), Postives = 82/166 (49.40%), Query Frame = 1
Query:   28 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFKN 522
            K  +  ++A++N L+  LC   +  +A  + D + ++ + PD  T++ILL             +I+  MV+     DI +Y   +  L    + +E + +   +     +P  F ++ ++  +  E ++++A+  + E+EKNG +    ++N+L+ A CKA   ++
Sbjct:  170 KLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLES 335          
The following BLAST results are available for this feature:
BLAST of CB250282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
PP273_ARATH9.517e-1224.24Pentatricopeptide repeat-containing protein At3g49... [more]
PP269_ARATH9.517e-1230.81Pentatricopeptide repeat-containing protein At3g48... [more]
PP132_ARATH9.517e-1222.94Pentatricopeptide repeat-containing protein At1g79... [more]
PP162_ARATH1.243e-1127.33Pentatricopeptide repeat-containing protein At2g18... [more]
PP164_ARATH2.120e-1127.44Pentatricopeptide repeat-containing protein At2g19... [more]
PP366_ARATH2.769e-1124.36Putative pentatricopeptide repeat-containing prote... [more]
PPR56_ARATH6.169e-1126.04Pentatricopeptide repeat-containing protein At1g22... [more]
PP226_ARATH8.057e-1122.29Pentatricopeptide repeat-containing protein At3g13... [more]

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Properties
Property NameValue
Genbank descriptionEST0058 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ074 similar to hypothetical Arabidopsis protein (acc# F96802), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250282 ID=CB250282; Name=CB250282; organism=Citrus sinensis; type=EST; length=525bp
GCAGTTTACACATTTAATGTCATGCAGAAATATGGCGTCACCCAAAATTT
AGCAGCATTCAATGGGCTACTGAGTGCTTTATGCAAGTCCAAGAATGTGA
GGAAGGCTCAGGAGATATTTGACTGTATGAATGATCGGTTCATTCCTGAC
TCAAAAACTTATAGTATACTACTTGAGGGGTGGGGAAAGGATCCAAATTT
GCCCAGGGCAAGAGAAATTTTCAGAGAAATGGTTGATACAGGCTGCAACC
CTGATATAGTAACCTATGGTATAATGGTTGACGTTCTCTGTAAGGCAGGG
CGGGTTGATGAAGCTCTTGGGATAGTCAAGTCGATGGATTCTATGGTTTG
TCAGCCAACTTCTTTCATCTATAGCGTTTTAGTTCATACATACGGGGTAG
AGAACCGGATTGAGGATGCTGTTGATACATTCTTAGAGATGGAGAAGAAT
GGAATTCAGGCTGATGTTGCAATGTATAATGCCTTGATTGGTGCCTTCTG
TAAAGCTAATAAATTCAAAAATGTG
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