CB250282
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP273_ARATH (Pentatricopeptide repeat-containing protein At3g49240 OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12 Identity = 40/165 (24.24%), Postives = 82/165 (49.70%), Query Frame = 1 Query: 37 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIPDSK------TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513 V + A+N +L AL ++ +A ++FD + P T+++++ G+ A E+FR+M D C+PD +++ +++ LC + EA + M+ +P + Y +L+ T E +I++ + M ++ ++ ++A+YN L KA K Sbjct: 306 VRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGKFEEAMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGK 470 HSP 2 Score: 67.0106 bits (162), Expect = 6.169e-11 Identity = 40/157 (25.48%), Postives = 77/157 (49.04%), Query Frame = 1 Query: 46 NLAAFNGLLSALCKSKNVRKAQEIFDCMND-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANK 513 NL FN +++ C +A E+F M D + PD+ +++ L+ + L A +++ EM + PD TYG+++D K G++DE K+M +P +Y+ L +++DA +F +M + ++ D Y ++ A +A + Sbjct: 349 NLGTFNVMVNGYCAGGKFEEAMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDA-KSFFDMMVSKLKMDDEAYKFIMRALSEAGR 504
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP269_ARATH (Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12 Identity = 53/172 (30.81%), Postives = 82/172 (47.67%), Query Frame = 1 Query: 13 FNVMQKY---GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-NDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-GIQADVAMYNALIGAFCKANK 513 F V +KY G + + A ++G+ +L +A+EI M N + PD+ TYS L+ G K L AR + +M GC PDI T+ I++ CK +D+AL +M S + VL+ + + N+ E A +EM KN ++ + Y LI K K Sbjct: 355 FRVSRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEKGFDIDSNLLDVLIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKK 526
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP132_ARATH (Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12 Identity = 39/170 (22.94%), Postives = 82/170 (48.24%), Query Frame = 1 Query: 13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFK 519 F Q+ G + +N L+ KA EI++ M + D TY +++ K L A ++F++M + P + +VD + KAGR+D ++ + M +P++ ++ L+ +Y +++ A+ + EM+K+G + + +Y +I + K+ K + Sbjct: 266 FKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLE 435
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP162_ARATH (Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11 Identity = 47/172 (27.33%), Postives = 83/172 (48.26%), Query Frame = 1 Query: 1 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRF---IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVEN--RIEDAVDTFLEMEKNGIQADVAMYNALIGAFC 501 A+ F M K G + + +FN LL+A S + ++FD R+ PD +Y +L++ + +A EI R+M G I+ + ++ L K G VDEA + M + C + +Y+V + E+ R+++ ++ EM G++ D YN L+ A+C Sbjct: 121 AMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAAKESPERVKELME---EMSSVGLKPDTVSYNYLMTAYC 289
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP164_ARATH (Pentatricopeptide repeat-containing protein At2g19280 OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11 Identity = 45/164 (27.44%), Postives = 75/164 (45.73%), Query Frame = 1 Query: 13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFC 501 F M+ G+ ++ +N L+ K+ + K E+ D M I PD TY+IL+ + A EI E++ G P + + ++ K G EA + M + +P S L+H Y R+E A+ F ++ G++ DV +YN LI +C Sbjct: 466 FRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYC 629 HSP 2 Score: 68.1662 bits (165), Expect = 2.769e-11 Identity = 44/169 (26.04%), Postives = 78/169 (46.15%), Query Frame = 1 Query: 22 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMND-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFKNV 525 ++ +G++Q+ + + ++ CK V K +E ++ R P+ YS L ++ RA IF+E+ + G PD V Y M+D C GR D+A ++ P+ ++L+ I DA F M+ G++ DV YN L+ + K ++ V Sbjct: 332 LKLFGISQDSVSVSSVIDGFCK---VGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKV 497 HSP 3 Score: 68.1662 bits (165), Expect = 2.769e-11 Identity = 41/170 (24.12%), Postives = 80/170 (47.06%), Query Frame = 1 Query: 13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFK 519 F + K G +L L+ A + ++ A+ +F M + D TY+ L+ G+GK L + E+ EM G +PD+ TY I++ + G +DEA I+ + P++ ++ ++ + ++A + M ++ DV +AL+ +CKA + + Sbjct: 431 FGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRME 600
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP366_ARATH (Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11 Identity = 38/156 (24.36%), Postives = 76/156 (48.72%), Query Frame = 1 Query: 58 FNGLLSALCKSKNVRKAQEIFDCMNDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFKNV 525 F L+ LC++ + A EI D M R + DS Y I++ G+ + ++ +A E F + +G P + TY ++ L K + ++ + M +P S + +V + +NR+ +A F ME+ GI+ Y+ + C+++++ + Sbjct: 367 FEILVKGLCRANRMVDALEIVDIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNEMIENGIEPDSVAITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSYSIFVKELCRSSRYDEI 522
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PPR56_ARATH (Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11 Identity = 44/169 (26.04%), Postives = 81/169 (47.93%), Query Frame = 1 Query: 13 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKF 516 + M ++G+ + FN +L + K+ ++ + +I+ M R I S+ TY+IL+ G+ K+ + AR +M +G ++ +++ CK G D+A G+ M + PT+ Y++ + RI+DA + M DV YN L+ + K KF Sbjct: 226 YETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM----AAPDVVSYNTLMHGYIKMGKF 390
BLAST of CB250282 vs. ExPASy Swiss-Prot
Match: PP226_ARATH (Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11 Identity = 37/166 (22.29%), Postives = 82/166 (49.40%), Query Frame = 1 Query: 28 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMNDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSMVCQPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIQADVAMYNALIGAFCKANKFKN 522 K + ++A++N L+ LC + +A + D + ++ + PD T++ILL +I+ MV+ DI +Y + L + +E + + + +P F ++ ++ + E ++++A+ + E+EKNG + ++N+L+ A CKA ++ Sbjct: 170 KLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLES 335 The following BLAST results are available for this feature:
BLAST of CB250282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 168
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250282 ID=CB250282; Name=CB250282; organism=Citrus sinensis; type=EST; length=525bpback to top |