CB250298

Overview
NameCB250298
Unique NameCB250298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    3 SMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 164
            S TK   +A   TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  124 SATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.621e-14
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 3
Query:    3 SMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 170
            S  KA  IA   TFF  FDVPVFWPIL+ Y+ +L  LT++RQI HMIKYRYIPF +
Sbjct:  119 SFMKATLIAITCTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTV 174          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1_SCHPO (Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 3
Query:    3 SMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 170
            S  +A   A V +FF +FDVPVFWPIL+ Y++VL     RRQI HM+KYRY+PF+I
Sbjct:  121 SSMRATLFALVASFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDI 176          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1_DICDI (Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 3
Query:    3 SMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 170
            S+ KA  I+   TF    D+PVFWPILL Y+I++F +TM++QI HMIKY+YIPF +
Sbjct:  123 SIFKALFISIFCTFIPFLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTV 178          
The following BLAST results are available for this feature:
BLAST of CB250298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1_CHICK9.312e-1564.81Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]
RER1_CAEEL4.621e-1462.50Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]
RER1_SCHPO8.715e-1357.14Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 ... [more]
RER1_DICDI1.487e-1255.36Protein RER1 homolog OS=Dictyostelium discoideum G... [more]

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Properties
Property NameValue
Genbank descriptionEST0077 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ105 similar to AtRer1A (acc# NP_195633), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250298 ID=CB250298; Name=CB250298; organism=Citrus sinensis; type=EST; length=601bp
ACTCCATGACCAAGGCTTTCTGCATAGCTTTTGTAATGACATTCTTTTCT
GTGTTTGATGTTCCTGTGTTTTGGCCTATATTACTTTGTTACTGGATTGT
TCTGTTTGTTCTTACAATGAGACGCCAAATCGCACACATGATCAAATACA
GATATATCCCGTTCAACATTGGAAAACAGAAGTATGGTGGTAAGAAACCT
TCATCAAGTGGCGGTGGCTCCCGTGGGGACTGAAGCAGAACTTATTCACA
GAGCCAGTAGAAAAAGGACTGGATGGGGATAAAAAAATAGGTTATGGGAA
GATATTATAATTGAATTTTTTCCTTTCAAGGGACATGCACTTGGTTATTA
TGAATGAAGCTTATAGTAGACATAAAGTTCAATAGTGCGGGATTGCTAAA
ATGTTGCAGAATTGAAACTTTAATGTTTACGCTCATGTTATGAAGATTCC
AAGATTGTTGGCAATGTAATTGCATGACCCATTATAACAAAGATTTTACG
GGAAATTTTTCATTCGTTTATCGGTTAGTGTAATGTTGTCAAAAGCCTTT
GTCATCCCACATGGTTTACTGGAAGATAGCATGGAAACACTATTTGTATT
G
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