CB250308

Overview
NameCB250308
Unique NameCB250308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN1_BOVIN (Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.592e-46
Identity = 87/139 (62.59%), Postives = 111/139 (79.86%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH  GK+F DF E+R EI+A+TD+  G NKG+S   I L+++SPHVL++TLVDLPG+TKVPVG+QP DIE +IR M+M ++ + +CLILAV+PANSDLANSDAL++A   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   82 EFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVL 220          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN_DROME (Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 6.051e-46
Identity = 84/140 (60.00%), Postives = 112/140 (80.00%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            GEFLH+ GK+F  F EIR+EI+ +TD+  G NKG+S+  I L+++SPHVL++TL+DLPG+TKV +G+QP DIE +I+ MI  +I++ +CLILAVTPAN+DLANSDAL++A   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   76 GEFLHIKGKKFSSFDEIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVLNLTLIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDPQGVRTIGVITKLDLMDEGTDARDIL 215          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: VPS1_YEAST (Vacuolar protein sorting-associated protein 1 OS=Saccharomyces cerevisiae GN=VPS1 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 2.299e-45
Identity = 83/140 (59.29%), Postives = 110/140 (78.57%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            GEFLHLPGK+FY+F EIR+EI  +TDK  G N G+S   I L+I+SPHVL +TLVDLPG+TKVPVG+QP DIE +I+ M++ YI +P+ +IL+V  AN+DLANSD L++A   DP+G RTIG++TK+D+MD+GT     L
Sbjct:  123 GEFLHLPGKKFYNFDEIRKEIVKETDKVTGANSGISSVPINLRIYSPHVLTLTLVDLPGLTKVPVGDQPPDIERQIKDMLLKYISKPNAIILSVNAANTDLANSDGLKLAREVDPEGTRTIGVLTKVDLMDQGTDVIDIL 262          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN2_RAT (Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.922e-45
Identity = 86/139 (61.87%), Postives = 109/139 (78.42%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH   K+F DF E+R+EI+A+TD+  G NKG+S   I L+++SPHVL++TL+DLPGITKVPVG+QP DIE +I+ MI+ +I + S LILAVTPAN DLANSDAL++A   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   82 EFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVL 220          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN2_MOUSE (Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 3.922e-45
Identity = 86/139 (61.87%), Postives = 109/139 (78.42%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH   K+F DF E+R+EI+A+TD+  G NKG+S   I L+++SPHVL++TL+DLPGITKVPVG+QP DIE +I+ MI+ +I + S LILAVTPAN DLANSDAL++A   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   82 EFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVL 220          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN2_HUMAN (Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 3.922e-45
Identity = 86/139 (61.87%), Postives = 109/139 (78.42%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH   K+F DF E+R+EI+A+TD+  G NKG+S   I L+++SPHVL++TL+DLPGITKVPVG+QP DIE +I+ MI+ +I + S LILAVTPAN DLANSDAL++A   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   82 EFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVL 220          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN1_CAEEL (Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 3.922e-45
Identity = 85/139 (61.15%), Postives = 110/139 (79.14%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH  G RF DF  +R+EI+ +TD+  G NKG+S   I L++FSP+VL++TL+DLPG+TKVPVG+QPADIE +IR MI+++I + +CLILAVTPANSDLA SDAL++A   DP G RTIG++TKLD+MD GT A   L
Sbjct:   84 EFLHKKGHRFVDFDAVRKEIEDETDRVTGQNKGISPHPINLRVFSPNVLNLTLIDLPGLTKVPVGDQPADIEQQIRDMILTFINRETCLILAVTPANSDLATSDALKLAKEVDPQGLRTIGVLTKLDLMDEGTDAREIL 222          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN2_BOVIN (Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.690e-45
Identity = 86/139 (61.87%), Postives = 109/139 (78.42%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH   ++F DF E+R+EI+A+TD+  G NKG+S   I L+I+SPHVL++TL+DLPGITKVPVG+QP DIE +I+ MI+ +I + S LILAVTPAN DLANSDAL++A   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   82 EFLHCKSRKFTDFEEVRQEIEAETDRVTGTNKGISPVPINLRIYSPHVLNLTLIDLPGITKVPVGDQPQDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVL 220          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DNM1L_DANRE (Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 7.397e-44
Identity = 82/141 (58.16%), Postives = 111/141 (78.72%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTLI 425
            G+FLH   K + DF EIR+EI+ +T++ +G NKG+SD+ I LKIFSPHV+++TLVDLPGITKVPVG+QP DIE +IR +I+ YI  P+ +ILAVT AN+D+A S+AL++A   DPDG RT+ ++TKLD+MD GT A   L+
Sbjct:   90 GKFLHTKNKIYTDFDEIRQEIENETERVSGNNKGISDEPIHLKIFSPHVVNLTLVDLPGITKVPVGDQPKDIELQIRELILKYISNPNSIILAVTAANTDMATSEALKVAREVDPDGRRTLAVVTKLDLMDAGTDAMDVLM 230          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.068e-42
Identity = 79/140 (56.43%), Postives = 109/140 (77.86%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            GEFLHLPG++F++F +IR EI  +T+++ G N G+S   I L+I+SPHVL +TLVDLPG+TKVPVG+QP DIE +IR M++ YI + + +ILAV  AN+DLANSD L++A   DP+G RTIG++TK+D+MD+GT     L
Sbjct:   98 GEFLHLPGQKFFEFEKIREEIVRETEEKTGKNVGISSVPIYLRIYSPHVLTLTLVDLPGLTKVPVGDQPRDIEKQIREMVLKYISKNNAIILAVNAANTDLANSDGLKLAREVDPEGLRTIGVLTKVDLMDKGTDVVDIL 237          
The following BLAST results are available for this feature:
BLAST of CB250308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
DYN1_BOVIN1.592e-4662.59Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1[more]
DYN_DROME6.051e-4660.00Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=... [more]
VPS1_YEAST2.299e-4559.29Vacuolar protein sorting-associated protein 1 OS=S... [more]
DYN2_RAT3.922e-4561.87Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1[more]
DYN2_MOUSE3.922e-4561.87Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2[more]
DYN2_HUMAN3.922e-4561.87Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2[more]
DYN1_CAEEL3.922e-4561.15Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV... [more]
DYN2_BOVIN6.690e-4561.87Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1[more]
DNM1L_DANRE7.397e-4458.16Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=... [more]
VPS1_SCHPO1.068e-4256.43Vacuolar protein sorting-associated protein 1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionEST0092 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ129 similar to dynamin-like protein ADL2 (acc# BAB86118), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250308 ID=CB250308; Name=CB250308; organism=Citrus sinensis; type=EST; length=436bp
ACGGCGAGTTCTTGCACTTGCCTGGGAAAAGGTTTTATGATTTTTCCGAG
ATCAGGAGAGAGATTCAGGCTCAAACTGACAAGGAAGCTGGAGGAAACAA
AGGTGTGTCAGACAAGCAAATCCGTTTGAAGATTTTTTCACCTCACGTTC
TTGATATCACACTTGTGGATCTGCCTGGTATAACAAAGGTCCCAGTTGGT
GAGCAGCCAGCTGATATTGAAGCACGAATTAGAACGATGATTATGTCATA
TATCAAGCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAG
ATTTGGCAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGAT
GGTTATAGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGG
TACCTCGGCCGCGACCACGCTAATCACTAGTGAATT
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