CB250308

Overview
NameCB250308
Unique NameCB250308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DNM1L_HUMAN (Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.631e-41
Identity = 80/141 (56.74%), Postives = 110/141 (78.01%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTLI 425
            G+FLH   K + DF EIR+EI+ +T++ +G NKGVS + I LKIFSP+V+++TLVDLPG+TKVPVG+QP DIE +IR +I+ +I  P+ +ILAVT AN+D+A S+AL+I+   DPDG RT+ +ITKLD+MD GT A   L+
Sbjct:   91 GKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLM 231          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DNM1L_BOVIN (Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.631e-41
Identity = 80/141 (56.74%), Postives = 110/141 (78.01%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTLI 425
            G+FLH   K + DF EIR+EI+ +T++ +G NKGVS + I LKIFSP+V+++TLVDLPG+TKVPVG+QP DIE +IR +I+ +I  P+ +ILAVT AN+D+A S+AL+I+   DPDG RT+ +ITKLD+MD GT A   L+
Sbjct:  104 GKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLM 244          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DNM1L_RAT (Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm1l PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.436e-41
Identity = 79/141 (56.03%), Postives = 110/141 (78.01%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTLI 425
            G+FLH   K + DF EIR+EI+ +T++ +G NKGVS + I LK+FSP+V+++TLVDLPG+TKVPVG+QP DIE +IR +I+ +I  P+ +ILAVT AN+D+A S+AL+I+   DPDG RT+ +ITKLD+MD GT A   L+
Sbjct:  104 GKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLM 244          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DNM1L_MOUSE (Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.436e-41
Identity = 79/141 (56.03%), Postives = 110/141 (78.01%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTLI 425
            G+FLH   K + DF EIR+EI+ +T++ +G NKGVS + I LK+FSP+V+++TLVDLPG+TKVPVG+QP DIE +IR +I+ +I  P+ +ILAVT AN+D+A S+AL+I+   DPDG RT+ +ITKLD+MD GT A   L+
Sbjct:   97 GKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLM 237          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.909e-40
Identity = 75/139 (53.96%), Postives = 108/139 (77.70%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH+P  +F D +++R EI+ +T + AG NKG++   I LKI+S  VL++TL+DLPG+TK+PVG+QP DIEA+ R++IM YI +P+ +ILAV+PAN D+ NS+ L++A   DP G RTIG++TKLD+MD+GT+A   L
Sbjct:  116 EFLHIPDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLKIYSTRVLNLTLIDLPGLTKIPVGDQPTDIEAQTRSLIMEYISRPNSIILAVSPANFDIVNSEGLKLARSVDPKGKRTIGVLTKLDLMDQGTNAMDIL 254          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.486e-39
Identity = 76/139 (54.68%), Postives = 103/139 (74.10%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLHLP KRF DF  +R+EIQ +TD+E G  K +S   I L I+SP+V+++TL+DLPG+TKV V  QP  I   I  M+ SYI++P+C+ILA++PAN DLA SDA++I+   DP G RTIG++TK+D+MD+GT A   L
Sbjct:   88 EFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGDRTIGVLTKIDLMDKGTDAVDIL 226          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.486e-39
Identity = 77/139 (55.40%), Postives = 103/139 (74.10%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLHLP KRF DF  +R+EIQ +TD+E G  K +S   I L I+SP+V+++TLVDLPG+TKV V  QP  I   I  M+ SYI++P+C+ILA++PAN DLA SDA++I+   DP G RTIG++TK+D+MD+GT A   L
Sbjct:   88 EFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISTVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGDRTIGVLTKIDLMDKGTDAVDIL 226          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 2.722e-38
Identity = 73/139 (52.52%), Postives = 103/139 (74.10%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLHLP K+F DF+ +R+EIQ +TD+E G +K +S   I L I+SP+V+++TL+DLPG+TKV V  Q   I   I  M+ SYI++P+C+ILA++PAN DLA SDA++I+   DP G RT G++TK+D+MD+GT A   L
Sbjct:   88 EFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEIL 226          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.556e-38
Identity = 73/139 (52.52%), Postives = 104/139 (74.82%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLHLP K+F DF+ +RREIQ +TD+  G NK +S   I L I+SP+V+++TL+DLPG+TKV V  QP  I   I +M+ +Y+ +P+C+ILA++PAN D+A SDA+++A   DP G RT G++TKLD+MD+GT+A   L
Sbjct:   94 EFLHLPKKQFTDFALVRREIQDETDRITGKNKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPETIAEDIESMVRTYVDKPNCIILAISPANQDIATSDAIKLAKDVDPTGERTFGVLTKLDLMDKGTNALEVL 232          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 3.931e-37
Identity = 72/135 (53.33%), Postives = 103/135 (76.30%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSA 410
            EFLHL  K+F +FS +R+EI+ +TD+  G NK +S   I L IFSP+V+++TL+DLPG+TKV V  QP  I   I +M+ SY+++P+CLILA++PAN D+A SDA+++A   DP G RT G++TKLD+MD+GT+A
Sbjct:   89 EFLHLTNKKFTNFSLVRKEIEDETDRITGKNKQISSIPIHLSIFSPNVVNLTLIDLPGLTKVAVEGQPETIVEDIESMVRSYVEKPNCLILAISPANQDIATSDAMKLAKEVDPIGDRTFGVLTKLDLMDKGTNA 223          
The following BLAST results are available for this feature:
BLAST of CB250308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
DNM1L_HUMAN2.631e-4156.74Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE... [more]
DNM1L_BOVIN2.631e-4156.74Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2... [more]
DNM1L_RAT3.436e-4156.03Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm... [more]
DNM1L_MOUSE3.436e-4156.03Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE... [more]
YB68_SCHPO2.909e-4053.96Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]
SDLCA_SOYBN5.486e-3954.68Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
SDL5A_SOYBN5.486e-3955.40Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
DRP1A_ARATH2.722e-3852.52Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1E_ARATH3.556e-3852.52Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH3.931e-3753.33Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionEST0092 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ129 similar to dynamin-like protein ADL2 (acc# BAB86118), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250308 ID=CB250308; Name=CB250308; organism=Citrus sinensis; type=EST; length=436bp
ACGGCGAGTTCTTGCACTTGCCTGGGAAAAGGTTTTATGATTTTTCCGAG
ATCAGGAGAGAGATTCAGGCTCAAACTGACAAGGAAGCTGGAGGAAACAA
AGGTGTGTCAGACAAGCAAATCCGTTTGAAGATTTTTTCACCTCACGTTC
TTGATATCACACTTGTGGATCTGCCTGGTATAACAAAGGTCCCAGTTGGT
GAGCAGCCAGCTGATATTGAAGCACGAATTAGAACGATGATTATGTCATA
TATCAAGCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAG
ATTTGGCAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGAT
GGTTATAGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGG
TACCTCGGCCGCGACCACGCTAATCACTAGTGAATT
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