CB250308

Overview
NameCB250308
Unique NameCB250308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_EUMJU (Interferon-induced GTP-binding protein Mx1 OS=Eumetopias jubatus GN=MX1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.830e-26
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSA 410
            D SE+  EI    +  AG  +G+S + I L++ SPHV D+TL+DLPGIT+V VG QPADI  + + +I  YI +   + L V P N D+A ++AL +A   DPDG RTIGI+TK D++DRGT +
Sbjct:  133 DPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIKKYILKQETINLVVVPCNVDIATTEALSMAEEVDPDGDRTIGILTKPDLVDRGTES 256          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX2_MOUSE (Interferon-induced GTP-binding protein Mx2 OS=Mus musculus GN=Mx2 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 3.122e-26
Identity = 60/122 (49.18%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D SE+   I    +  AG   G+SDK I L + SP+V D+TL+DLPGIT+V VG QPADI  +I+ +I +YI++   + L V P+N D+A ++AL +A   DP+G RTIGI+TK D++DRGT
Sbjct:  128 DPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDRGT 249          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_RAT (Interferon-induced GTP-binding protein Mx1 OS=Rattus norvegicus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.122e-26
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 3
Query:   45 SEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            S + REI    +  AG    +S   I L++ SPHV D+TL+DLPGIT+V VG+QPADIE +I+ +I  YI++   + L V P+N D+A ++AL++A   DP G RTIGI+TK D++DRGT
Sbjct:  128 SLVEREINKAQNLIAGEGLKISSDLISLEVSSPHVPDLTLIDLPGITRVAVGDQPADIEHKIKRLITEYIQKQETINLVVVPSNVDIATTEALKMAQEVDPQGDRTIGILTKPDLVDRGT 247          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX2_CANFA (Interferon-induced GTP-binding protein Mx2 OS=Canis familiaris GN=MX2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.078e-26
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 3
Query:   30 RFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            +F D S++ +EI+   +  AG   G+S + I L+I SP V D+TL+DLPGIT+V VG QP DI  +I+ +I +YI++   + L V P N D+A ++AL +A   DP+G RTIG++TK D++DRGT
Sbjct:  179 QFQDPSQVEKEIRQAQNIIAGQGLGISHELISLEITSPEVPDLTLIDLPGITRVAVGNQPQDIGVQIKALIKNYIQKQETINLVVVPCNVDIATTEALSMAQEVDPNGDRTIGVLTKPDLVDRGT 303          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_PONAB (Interferon-induced GTP-binding protein Mx1 OS=Pongo abelii GN=MX1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.078e-26
Identity = 59/122 (48.36%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D SE+ +EI    +  AG   G+S + I L+I S  V D+TL+DLPGIT+V VG QPADI  +I+T+I  YI++   + L V P+N D+A ++AL +A   DP+G RTIGI+TK D++D+GT
Sbjct:  135 DASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGT 256          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_HUMAN (Interferon-induced GTP-binding protein Mx1 OS=Homo sapiens GN=MX1 PE=1 SV=4)

HSP 1 Score: 116.701 bits (291), Expect = 4.078e-26
Identity = 59/122 (48.36%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D SE+ +EI    +  AG   G+S + I L+I S  V D+TL+DLPGIT+V VG QPADI  +I+T+I  YI++   + L V P+N D+A ++AL +A   DP+G RTIGI+TK D++D+GT
Sbjct:  135 DASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGT 256          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_HORSE (Interferon-induced GTP-binding protein Mx1 OS=Equus caballus GN=MX1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.955e-26
Identity = 54/119 (45.38%), Postives = 84/119 (70.59%), Query Frame = 3
Query:   48 EIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            ++  +++   +  AG   G+S + + L++ SPHV D+TL+DLPGIT+V VG QPADI  +I+T+I  YI++   + L V P+N D+A ++AL +A   DP+G RTIGI+TK D++D+GT
Sbjct:  138 DVEEQVRKAQNVLAGEGVGISQELVTLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKTLIRKYIQRQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGT 256          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_PHOVI (Interferon-induced GTP-binding protein Mx1 OS=Phoca vitulina GN=MX1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.084e-26
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSA 410
            D SE+  EI    +  AG  +G+S + I L++ SPHV D+TL+DLPGIT+V VG QPADI  + + +I  YI +   + L V P N D+A ++AL +A   DP G RTIGI+TK D++DRGT +
Sbjct:  133 DPSEVEVEISKAQNVIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIRKYILKQETINLVVVPCNVDIATTEALSMAQEVDPSGDRTIGILTKPDLVDRGTES 256          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX2_PIG (Interferon-induced GTP-binding protein Mx2 OS=Sus scrofa GN=MX2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.186e-25
Identity = 57/121 (47.11%), Postives = 82/121 (67.77%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 401
            D S++ REI+   D  AG   G+S + I L++ SP V D+TL+DLPGIT+V VG QP DI  +I+ +I  YI++   + L V P N D+A ++AL++A   DP+G RTIGI+TK D++D G
Sbjct:  178 DPSQVEREIRKAQDAIAGSGVGISHELISLEVTSPEVPDLTLIDLPGITRVAVGNQPQDIGLQIKALIRKYIQEQQTINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDTG 298          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX2_SHEEP (Interferon-induced GTP-binding protein Mx2 OS=Ovis aries GN=MX2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.550e-25
Identity = 57/126 (45.24%), Postives = 86/126 (68.25%), Query Frame = 3
Query:   27 KRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            ++ ++ SE+ REI+   +  AG   G+S + I L++ SP V D+TL+DLPGIT+V V  QP DI  +I+ +I +YI++   + L V P N D+A ++AL +A   DPDG RTIGI+TK D++D+GT
Sbjct:  177 QQLHNPSEVEREIRRAQNIIAGNGVGISHELINLEVTSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIKTYIQRQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPDLVDKGT 302          
The following BLAST results are available for this feature:
BLAST of CB250308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MX1_EUMJU1.830e-2648.39Interferon-induced GTP-binding protein Mx1 OS=Eume... [more]
MX2_MOUSE3.122e-2649.18Interferon-induced GTP-binding protein Mx2 OS=Mus ... [more]
MX1_RAT3.122e-2649.17Interferon-induced GTP-binding protein Mx1 OS=Ratt... [more]
MX2_CANFA4.078e-2646.40Interferon-induced GTP-binding protein Mx2 OS=Cani... [more]
MX1_PONAB4.078e-2648.36Interferon-induced GTP-binding protein Mx1 OS=Pong... [more]
MX1_HUMAN4.078e-2648.36Interferon-induced GTP-binding protein Mx1 OS=Homo... [more]
MX1_HORSE6.955e-2645.38Interferon-induced GTP-binding protein Mx1 OS=Equu... [more]
MX1_PHOVI9.084e-2647.58Interferon-induced GTP-binding protein Mx1 OS=Phoc... [more]
MX2_PIG1.186e-2547.11Interferon-induced GTP-binding protein Mx2 OS=Sus ... [more]
MX2_SHEEP1.550e-2545.24Interferon-induced GTP-binding protein Mx2 OS=Ovis... [more]

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Properties
Property NameValue
Genbank descriptionEST0092 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ129 similar to dynamin-like protein ADL2 (acc# BAB86118), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250308 ID=CB250308; Name=CB250308; organism=Citrus sinensis; type=EST; length=436bp
ACGGCGAGTTCTTGCACTTGCCTGGGAAAAGGTTTTATGATTTTTCCGAG
ATCAGGAGAGAGATTCAGGCTCAAACTGACAAGGAAGCTGGAGGAAACAA
AGGTGTGTCAGACAAGCAAATCCGTTTGAAGATTTTTTCACCTCACGTTC
TTGATATCACACTTGTGGATCTGCCTGGTATAACAAAGGTCCCAGTTGGT
GAGCAGCCAGCTGATATTGAAGCACGAATTAGAACGATGATTATGTCATA
TATCAAGCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAG
ATTTGGCAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGAT
GGTTATAGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGG
TACCTCGGCCGCGACCACGCTAATCACTAGTGAATT
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