CB250308

Overview
NameCB250308
Unique NameCB250308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX_SINCH (Interferon-induced GTP-binding protein Mx OS=Siniperca chuatsi GN=mx PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.511e-23
Identity = 53/122 (43.44%), Postives = 82/122 (67.21%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D +++ ++I+   D+ AG   G+SD  I L+I SP V D+TL+DLPGI +V V  QP +I  +I+ +I ++I +   + L V P N D+A ++AL +A   DPDG RT+GI+TK D++D+GT
Sbjct:   98 DPADVEKKIREAQDEMAGVGVGISDDLISLEIGSPGVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQTFITKQETISLVVVPCNVDIATTEALNMAQRVDPDGERTLGILTKPDLVDKGT 219          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX_ONCMY (Interferon-induced GTP-binding protein Mx OS=Oncorhynchus mykiss GN=mx PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.511e-23
Identity = 53/122 (43.44%), Postives = 82/122 (67.21%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D S++ ++I+   D+ AG   G+SD  I L+I SP V D+TL+DLPGI +V V  QP +I  +I+ +I  +I +   + L V P N D+A ++AL++A   DP+G RT+GI+TK D++D+GT
Sbjct:   99 DPSDVEKKIREAQDEMAGVGVGISDDLISLEIGSPDVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIRKFIMKQETISLVVVPCNVDIATTEALKMAQEVDPEGERTLGILTKPDLVDKGT 220          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX_DICLA (Interferon-induced GTP-binding protein Mx OS=Dicentrarchus labrax GN=mx PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 9.401e-23
Identity = 52/122 (42.62%), Postives = 81/122 (66.39%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D +++ ++I+   +K AG   G+S+  I L+I SP V D+TL+DLPGI +V V  QP +I  +I+ +I  +I +   + L V P N D+A ++AL +A   DPDG RT+GI+TK D++D+GT
Sbjct:   98 DPADVEKKIREAQNKIAGPGSGISEDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFITKQETISLVVVPCNVDIATTEALNMAQRVDPDGERTLGILTKPDLVDKGT 219          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MXE_DANRE (Interferon-induced GTP-binding protein MxE OS=Danio rerio GN=mxe PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.401e-23
Identity = 53/121 (43.80%), Postives = 80/121 (66.12%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 401
            D ++I + +       AG  +G+S + I L+I S  V D+TL+DLPGI +V  G QP DIE +I+++I  +IK+   + L V PAN D+A ++AL++A   DP G RT+GI+TK D++DRG
Sbjct:  108 DPAKIEKAVLNAQTALAGIGEGISHEMITLEIQSCDVPDLTLIDLPGIARVATGNQPEDIEKQIKSLIEKFIKRQETISLVVVPANIDIATTEALKMASTVDPTGQRTLGILTKPDLVDRG 228          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX_CHICK (Interferon-induced GTP-binding protein Mx OS=Gallus gallus GN=MX PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.735e-22
Identity = 51/120 (42.50%), Postives = 79/120 (65.83%), Query Frame = 3
Query:   45 SEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            SE+++ I+   D  AG N  +S + I L+I+SP V D+TL+DLPGI +  VG QP D   +I+T++  YI     +I+ V P N D+A ++AL++A   DP G RT+G++TK D+++ GT
Sbjct:  181 SEVKKAIRKAQDIVAGTNGSISGELISLEIWSPDVPDLTLIDLPGIAREAVGNQPQDNGQQIKTLLKKYIGCKETIIVVVVPCNVDIATTEALKMAQEVDPTGERTLGVLTKPDLVNEGT 300          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX_SOLSE (Interferon-induced GTP-binding protein Mx OS=Solea senegalensis GN=mx PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.039e-21
Identity = 52/122 (42.62%), Postives = 81/122 (66.39%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D +++ ++I+    + AG   G+S+  I L+I SP V D+TL+DLPGIT+V V  QP +I  +I+ +I  +I +   + L V   N DLA ++ALQ+A   DP+G RT+GI+TK D++D+GT
Sbjct:   98 DPADVEKKIEEAQIQIAGVGVGISENMISLEIASPDVPDLTLIDLPGITRVAVHGQPVNIGEQIKKLIHKFITKQETICLVVHACNVDLATTEALQMAQEEDPEGERTLGILTKPDLVDKGT 219          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MXC_DANRE (Interferon-induced GTP-binding protein MxC OS=Danio rerio GN=mxc PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.357e-21
Identity = 50/105 (47.62%), Postives = 72/105 (68.57%), Query Frame = 3
Query:   87 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 401
            AG  +G+S + I L+I S  V D+TL+DLPGI +V  G QP DIE +I+ +I  +IK+   + L V PAN D+A ++AL++A   DP G RT+ I+TK D++DRG
Sbjct:  124 AGTGEGISHEMITLEIQSCDVPDLTLIDLPGIARVATGNQPEDIEKQIKDLIEKFIKRQETISLVVVPANIDIATTEALKMASTVDPTGQRTLCILTKPDLVDRG 228          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_ICTPU (Interferon-induced GTP-binding protein Mx1 OS=Ictalurus punctatus GN=mx1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.773e-21
Identity = 50/127 (39.37%), Postives = 82/127 (64.57%), Query Frame = 3
Query:   45 SEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTLI 425
            +++ ++I+   D  AG   G+SD+ I L++ S  V D+TL+DLPGI +V V  QP +I  +I+ +I  +I +   + L V P+N D+A ++AL++A   DP+G RT+GI+TK D++D+GT      I
Sbjct:  106 ADVEKKIREAQDHMAGVGVGISDELISLEVTSADVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIKKFITKQETINLVVVPSNVDIATTEALKMAQEVDPNGERTLGILTKPDLVDKGTEETVVSI 232          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX_LARCR (Interferon-induced GTP-binding protein Mx OS=Larimichthys crocea GN=mx PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.799e-21
Identity = 49/120 (40.83%), Postives = 79/120 (65.83%), Query Frame = 3
Query:   45 SEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            +++ ++I+   DK AG    ++D  I L+I SP V D+TL+ LPGI +V V +QP +I  +I+ +I  +IK+   + L V P N D+A ++AL++A   DPDG RT+ I+TK D++ +GT
Sbjct:  100 ADVEKKIREAQDKMAGNGVEIADDLISLEIASPDVPDLTLIALPGIARVAVKKQPENIGDQIKRLIQKFIKKQETINLVVVPCNMDIATTEALKMAQEVDPDGERTLVILTKPDLVKKGT 219          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX2_BUBBU (Interferon-induced GTP-binding protein Mx2 OS=Bubalus bubalis GN=MX2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.799e-21
Identity = 55/123 (44.72%), Postives = 80/123 (65.04%), Query Frame = 3
Query:   45 SEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            SE+  EI+   +  AG  +G+S + I L++ SP V D+TL+DLPGIT+V V  QP DI  +I+ +I   I++   + L V P N D+A    ++AL +A   DPDG RTIGI+TK D++D+GT
Sbjct:  180 SEVEWEIRRAQNIIAGNGRGISHELINLEVTSPDVPDLTLIDLPGITRVAVENQPQDIGLQIKALI---IQRQETINLVVVPCNVDIATKKYTEALSMAQEVDPDGDRTIGILTKPDLVDKGT 299          
The following BLAST results are available for this feature:
BLAST of CB250308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MX_SINCH5.511e-2343.44Interferon-induced GTP-binding protein Mx OS=Sinip... [more]
MX_ONCMY5.511e-2343.44Interferon-induced GTP-binding protein Mx OS=Oncor... [more]
MX_DICLA9.401e-2342.62Interferon-induced GTP-binding protein Mx OS=Dicen... [more]
MXE_DANRE9.401e-2343.80Interferon-induced GTP-binding protein MxE OS=Dani... [more]
MX_CHICK2.735e-2242.50Interferon-induced GTP-binding protein Mx OS=Gallu... [more]
MX_SOLSE1.039e-2142.62Interferon-induced GTP-binding protein Mx OS=Solea... [more]
MXC_DANRE1.357e-2147.62Interferon-induced GTP-binding protein MxC OS=Dani... [more]
MX1_ICTPU1.773e-2139.37Interferon-induced GTP-binding protein Mx1 OS=Icta... [more]
MX_LARCR8.799e-2140.83Interferon-induced GTP-binding protein Mx OS=Larim... [more]
MX2_BUBBU8.799e-2144.72Interferon-induced GTP-binding protein Mx2 OS=Buba... [more]

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Properties
Property NameValue
Genbank descriptionEST0092 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ129 similar to dynamin-like protein ADL2 (acc# BAB86118), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250308 ID=CB250308; Name=CB250308; organism=Citrus sinensis; type=EST; length=436bp
ACGGCGAGTTCTTGCACTTGCCTGGGAAAAGGTTTTATGATTTTTCCGAG
ATCAGGAGAGAGATTCAGGCTCAAACTGACAAGGAAGCTGGAGGAAACAA
AGGTGTGTCAGACAAGCAAATCCGTTTGAAGATTTTTTCACCTCACGTTC
TTGATATCACACTTGTGGATCTGCCTGGTATAACAAAGGTCCCAGTTGGT
GAGCAGCCAGCTGATATTGAAGCACGAATTAGAACGATGATTATGTCATA
TATCAAGCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAG
ATTTGGCAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGAT
GGTTATAGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGG
TACCTCGGCCGCGACCACGCTAATCACTAGTGAATT
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