CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_STAEQ (Acetylornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=argD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.680e-14
Identity = 52/161 (32.30%), Postives = 81/161 (50.31%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW--KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR  TG ++II+ + ++HG   G M AT Q     +F  V  G   A+  D     F +   +            TS + A  + E IQG  G++     ++  + +  K+   L I DEVQ G  RTG   +  E + + PDI+T+AKG+GNG+P+GA++
Sbjct:  104 ARKATGKSEIIAFKKSFHGRTYGAMSATGQKKITDQFGPVVPGFKFAIFND-----FNSFKSL------------TSNNTAAVIIEIIQGESGVLPADSLFMKQLNEYCKQKDILIIVDEVQTGIGRTGK-LYAHEHYQLSPDIITLAKGLGNGLPIGAML 246          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_METJA (Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.680e-14
Identity = 55/151 (36.42%), Postives = 75/151 (49.67%), Query Frame = 2
Query:   26 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            +IIS+ NA+HG    T+ AT +  +     Q G +    P  ++ V   D E   + + D          A  + E +QG GGI      YL AV         + I DEVQ G  RTG  F  FE +GV PDI+T+AK +G G+P+GAVV
Sbjct:  130 EIISMYNAFHGRTLTTLAATPKPKY-----QDGFYPL--PPGFKYVPFNDIEALKEAITD--------KTAAIMIEPVQGEGGIHVADKDYLKAVRDLCDDKNIVLIFDEVQCGMGRTGRMF-AFEHYGVEPDILTLAKALGGGVPIGAVV 264          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_THEMA (Acetylornithine aminotransferase OS=Thermotoga maritima GN=argD PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.807e-14
Identity = 49/150 (32.67%), Postives = 74/150 (49.33%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            I+S  N++HG   G++ AT Q  ++               P+  +          +V+DL    +    A FL E IQG  GI+     +L    K   +   L + DEVQ G  RTG  F  ++ +GVVPD++T AKG+G G+P+GAV+
Sbjct:  119 ILSAHNSFHGRTLGSLTATGQPKYQ--------------KPFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLF-AYQKYGVVPDVLTTAKGLGGGVPIGAVI 252          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALTY (Putrescine aminotransferase OS=Salmonella typhimurium GN=patA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALTI (Putrescine aminotransferase OS=Salmonella typhi GN=patA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALSV (Putrescine aminotransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=patA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALPK (Putrescine aminotransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=patA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALPB (Putrescine aminotransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=patA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALPA (Putrescine aminotransferase OS=Salmonella paratyphi A GN=patA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALNS (Putrescine aminotransferase OS=Salmonella newport (strain SL254) GN=patA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
ARGD_STAEQ3.680e-1432.30Acetylornithine aminotransferase OS=Staphylococcus... [more]
ARGD_METJA3.680e-1436.42Acetylornithine aminotransferase OS=Methanocaldoco... [more]
ARGD_THEMA4.807e-1432.67Acetylornithine aminotransferase OS=Thermotoga mar... [more]
PAT_SALTY6.278e-1435.06Putrescine aminotransferase OS=Salmonella typhimur... [more]
PAT_SALTI6.278e-1435.06Putrescine aminotransferase OS=Salmonella typhi GN... [more]
PAT_SALSV6.278e-1435.06Putrescine aminotransferase OS=Salmonella schwarze... [more]
PAT_SALPK6.278e-1435.06Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALPB6.278e-1435.06Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALPA6.278e-1435.06Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALNS6.278e-1435.06Putrescine aminotransferase OS=Salmonella newport ... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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