CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALHS (Putrescine aminotransferase OS=Salmonella heidelberg (strain SL476) GN=patA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALG2 (Putrescine aminotransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=patA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALEP (Putrescine aminotransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=patA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALDC (Putrescine aminotransferase OS=Salmonella dublin (strain CT_02021853) GN=patA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALAR (Putrescine aminotransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=patA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 55/156 (35.26%), Postives = 77/156 (49.36%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHAL--NPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H    N +  R  F ++G+             T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVTFGNINAMRMAF-SEGKK------------TGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALA4 (Putrescine aminotransferase OS=Salmonella agona (strain SL483) GN=patA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_CITK8 (Putrescine aminotransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=patA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 56/154 (36.36%), Postives = 76/154 (49.35%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G++ ATA+S ++  F  +  G  H     P+       G + A          T   VA  + E IQG GG+I    GYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGSLSATAKSTFRKPFMPLLPGFRHV----PF-------GNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPQGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPVGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ECTB_VIBCH (Diaminobutyrate--2-oxoglutarate transaminase OS=Vibrio cholerae GN=ectB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 53/165 (32.12%), Postives = 88/165 (53.33%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADG-EMYAKDVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVV 478
            AR  TG +++++  N +HG + G + AT   + +    +  +GV+      PY G  G DG  ++   +QD     +SG    A  L E++QG GG+   +  +L  V    +    L I D++QAG  RTG+ F+ FE  G+ PD+VT++K + G G+P+  V+
Sbjct:  120 ARKVTGRHNVVTFTNGFHGCSLGALAATGNQHHRQGAGLALSGVYRV----PYDGYAGVDGLTLFETMLQD----NSSGLDKPAAVLLETVQGEGGLNVASDAWLQRVQAICRAQQILLIVDDIQAGCGRTGT-FFSFEPSGIEPDMVTLSKSLSGYGLPMALVL 275          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_STRCL (Acetylornithine aminotransferase OS=Streptomyces clavuligerus GN=argD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 2
Query:   14 TGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            TG + I++ ++ +HG   G++  T Q   +  F  +   V H     PY      D E     V +          A  + E IQG  G++    GYL A  +  +  G L + DEVQ G  RTG H++  +A GV  D+VT+AKG+G G+PLGA V
Sbjct:  120 TGRSRIVAAQSGFHGRTMGSLALTGQPAKREPFLPLPGDVTHV----PY-----GDAEALRAAVTE--------DTAMVILEPIQGESGVVVPPKGYLRAAREITEATGTLLVLDEVQTGIGRTG-HWFAAQAEGVEADVVTLAKGLGGGLPLGAAV 258          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_SCHPO (Probable acetylornithine aminotransferase, mitochondrial OS=Schizosaccharomyces pombe GN=arg1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 52/163 (31.90%), Postives = 78/163 (47.85%), Query Frame = 2
Query:   17 GCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV-----PDIVTMAKGIGNGIPLGAVVTT 484
            G + I+   N++HG + G++  TA   +K  F  +   V  A+  DP      A  E +  D             A  + E +QG GGI    P +L A+ K+  K G   I DE+Q G  R+G   W   AH +V     PDI+T+AK + NG+P+GA + +
Sbjct:  167 GKSQIVYFNNSFHGRSLGSLSITANPKYKRGFQPLLPDVVQAVYNDP------ASIEQFVND-----------KTAAVIVEPVQGEGGICPAKPEFLIALRKACDKVGASLIYDEIQCGLGRSGD-LW---AHSIVKDVASPDIITVAKPLANGLPIGATIVS 308          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
PAT_SALHS6.278e-1435.06Putrescine aminotransferase OS=Salmonella heidelbe... [more]
PAT_SALG26.278e-1435.06Putrescine aminotransferase OS=Salmonella gallinar... [more]
PAT_SALEP6.278e-1435.06Putrescine aminotransferase OS=Salmonella enteriti... [more]
PAT_SALDC6.278e-1435.06Putrescine aminotransferase OS=Salmonella dublin (... [more]
PAT_SALAR6.278e-1435.26Putrescine aminotransferase OS=Salmonella arizonae... [more]
PAT_SALA46.278e-1435.06Putrescine aminotransferase OS=Salmonella agona (s... [more]
PAT_CITK86.278e-1436.36Putrescine aminotransferase OS=Citrobacter koseri ... [more]
ECTB_VIBCH6.278e-1432.12Diaminobutyrate--2-oxoglutarate transaminase OS=Vi... [more]
ARGD_STRCL6.278e-1433.76Acetylornithine aminotransferase OS=Streptomyces c... [more]
ARGD_SCHPO6.278e-1431.90Probable acetylornithine aminotransferase, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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