CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_THET2 (Acetylornithine/acetyl-lysine aminotransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=argD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.199e-14
Identity = 47/159 (29.56%), Postives = 74/159 (46.54%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR +TG    ++    + G   G++  T +  ++   +          +P   +   D E   + V +          A  + E +QG GG+    P +L A  +  ++ G L I DE+Q G  RTG  F  FE  G+VPDI+T+AK +G G+PLG  V
Sbjct:  124 ARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL-------VEPVEFIPYNDVEALKRAVDE--------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPDILTLAKALGGGVPLGVAV 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_THEEB (Acetylornithine aminotransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=argD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.199e-14
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            II+ + ++HG    T+ AT Q  ++  F+ +  G  +     PY  +   +  + + D            VA  L E +QG GG+      Y   V +   + G L I DEVQ G  RTGS  WG+E  GV PDI T AKG+  G+P+GA++
Sbjct:  135 IITAQASFHGRTLATITATGQPKYQKYFDPLVPGFAYV----PYNDLGALEALVASLDQPQ-------PQVAAILLEPLQGEGGVRPGDRAYFEQVRQLCTEKGILLIFDEVQVGMGRTGS-LWGYETLGVEPDIFTSAKGLAGGVPIGAMI 274          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_PYRAE (Acetylornithine/acetyl-lysine aminotransferase OS=Pyrobaculum aerophilum GN=argD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.199e-14
Identity = 51/150 (34.00%), Postives = 70/150 (46.67%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            I++  N++HG   G++  T    +K           L P    G F    E     V  LI   T   V     E IQG GG+    P +L A+ +  ++ G L I DEVQ GF RTG+  W F+ +GV PDI T  K +  G+P+G  V
Sbjct:  117 IVAFTNSFHGRTMGSLSITWNEKYK------KAFEPLYPHVRFGKFNVPHE-----VDKLIGEDTCCVVV----EPIQGEGGVNPATPEFLKALREEAQRKGALLIFDEVQTGFGRTGA-VWAFQKYGVEPDIFTAGKPVAGGLPIGLAV 250          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: GABT_BACSU (Probable 4-aminobutyrate aminotransferase OS=Bacillus subtilis GN=gabT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.071e-13
Identity = 55/167 (32.93%), Postives = 82/167 (49.10%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSN---WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV-QDLIDFGTSG----HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR YT    ++S    +HG    TM  T++     + F      V+ A  P  Y+   G   E Y   V Q   DF  +      VA  + E +QG GG I  +  ++  V    K+ G + +ADE+Q GFARTG++F   E   VVPD++T++K +  G+PL  V+
Sbjct:  128 ARKYTKRQGVVSFTRGFHGRTNMTMSMTSKVKPYKFGFGPFAPEVYQAPFPYYYQKPAGMSDESYDDMVIQAFNDFFIASVAPETVACVVMEPVQGEGGFIIPSKRFVQHVASFCKEHGIVFVADEIQTGFARTGTYF-AIEHFDVVPDLITVSKSLAAGLPLSGVI 293          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_YERP3 (Succinylornithine transaminase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=astC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.071e-13
Identity = 48/156 (30.77%), Postives = 72/156 (46.15%), Query Frame = 2
Query:   23 NDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            N I++ RNA+HG    T+ A  Q  +   F  +  G+HH +  D       A  E    D                + E IQG GG++     +L  +     +   L I DE+Q G  RTG   + +  +GV PD++T AK +G G P+GA++TT
Sbjct:  137 NQIVAFRNAFHGRTLFTVSAGGQPKYSQDFAPLPGGIHHGIFNDL------ASAEQLITD-----------QTCAVIVEPIQGEGGVLPADKEFLHGLRALCDRHNALLIFDEIQTGVGRTGE-LYAYMHYGVSPDVLTSAKALGGGFPIGAMLTT 274          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_CHLTE (Acetylornithine aminotransferase OS=Chlorobium tepidum GN=argD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.071e-13
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 2
Query:   14 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            T    ++SL N +HG   G +  TA+  +               D +  +    G +   DV+DL +   S   A    E +QG GGI +++  ++  + +  K+   L +ADE+QAG  RTG+ F+ +    + PD+V +AK +G G+PLGA++
Sbjct:  127 TDKTQVLSLTNCFHGRTYGALSLTAKPKYV--------------DGFEPLVPETGMIDFNDVEDL-ERKVSNRTAAVFVEFVQGEGGIHKVSEAFIAKLKELAKEHDFLIVADEIQAGCGRTGA-FFSYMPFDIQPDLVCVAKPLGGGLPLGAII 265          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_ANASP (Acetylornithine aminotransferase OS=Anabaena sp. (strain PCC 7120) GN=argD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.071e-13
Identity = 51/153 (33.33%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 481
            I++   ++HG    T+ AT Q+ ++  F+ +  G H+ +N +    V  A  E+   D +          VA  L E +QG GG+      Y   + +     G L + DEVQ G  R+G   WG+E  GV PDI T AKG+G GIP+GA+++
Sbjct:  150 ILTANASFHGRTLATITATGQAKYQKYFDPLVPGFHY-VNYNDISAVEAAISELDEGDYR----------VAAILIEPLQGEGGVRPGDVEYFQKLRQICDDTGILLMFDEVQVGMGRSGK-LWGYEYLGVEPDIFTSAKGLGGGIPIGAMMS 290          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALPC (Putrescine aminotransferase OS=Salmonella paratyphi C (strain RKS4594) GN=patA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.399e-13
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSIFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SALCH (Putrescine aminotransferase OS=Salmonella choleraesuis GN=patA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.399e-13
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A  +       T   +A  + E IQG GG+I    GYL  V K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSIFRRPFMPLLPGFRHV----PF-------GNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_PSEPK (Acetylornithine aminotransferase OS=Pseudomonas putida (strain KT2440) GN=argD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.399e-13
Identity = 49/156 (31.41%), Postives = 74/156 (47.44%), Query Frame = 2
Query:   23 NDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            ++II+  N++HG    T+    Q  +   F    TG+ H     PY  +     ++  K    +I             E IQG  G++     YL    K   +   L I DEVQ G  RTGS  + ++ +GV+PDI+T AK +G G P+GA++TT
Sbjct:  132 HEIIATVNSFHGRTLFTVSVGGQPKYSDGFGPKITGISHV----PYNDLEALKAQISDKTCAVVI-------------EPIQGESGVVPADKAYLEGARKLCDEHNALLIFDEVQTGVGRTGS-LYAYQHYGVIPDILTSAKSLGGGFPIGAMLTT 269          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
ARGD_THET28.199e-1429.56Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD_THEEB8.199e-1433.55Acetylornithine aminotransferase OS=Thermosynechoc... [more]
ARGD_PYRAE8.199e-1434.00Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
GABT_BACSU1.071e-1332.93Probable 4-aminobutyrate aminotransferase OS=Bacil... [more]
ASTC_YERP31.071e-1330.77Succinylornithine transaminase OS=Yersinia pseudot... [more]
ARGD_CHLTE1.071e-1329.68Acetylornithine aminotransferase OS=Chlorobium tep... [more]
ARGD_ANASP1.071e-1333.33Acetylornithine aminotransferase OS=Anabaena sp. (... [more]
PAT_SALPC1.399e-1335.06Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALCH1.399e-1335.06Putrescine aminotransferase OS=Salmonella cholerae... [more]
ARGD_PSEPK1.399e-1331.41Acetylornithine aminotransferase OS=Pseudomonas pu... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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