CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD2_BORPA (Acetylornithine aminotransferase 2 OS=Bordetella parapertussis GN=argD2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.116e-13
Identity = 51/154 (33.12%), Postives = 74/154 (48.05%), Query Frame = 2
Query:   17 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            G   II++ + +HG    TM A+ +  W      T     +   P   +   D       V+ LID  T       + E +QG  G+I     ++  + K   + G L I DEVQ G  RTGS F  ++   V+PDI+T+AKGIG GIPL A++
Sbjct:  123 GAYKIITMNHGFHGRTLATMSASGKPGW-----DTMFAPQVEGFPKAEINDLDS------VRALIDAQT----VAVMLEPVQGEAGVIPATREFMQGLRKLADEHGILFIVDEVQTGMGRTGSLF-AYQQFDVIPDIMTLAKGIGGGIPLAALL 260          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD2_BORBR (Acetylornithine aminotransferase 2 OS=Bordetella bronchiseptica GN=argD2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.116e-13
Identity = 51/154 (33.12%), Postives = 74/154 (48.05%), Query Frame = 2
Query:   17 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            G   II++ + +HG    TM A+ +  W      T     +   P   +   D       V+ LID  T       + E +QG  G+I     ++  + K   + G L I DEVQ G  RTGS F  ++   V+PDI+T+AKGIG GIPL A++
Sbjct:  123 GAYKIITMNHGFHGRTLATMSASGKPGW-----DTMFAPQVEGFPKAEINDLDS------VRALIDAQT----VAVMLEPVQGEAGVIPATREFMQGLRKLADEHGILFIVDEVQTGMGRTGSLF-AYQQFDVIPDIMTLAKGIGGGIPLAALL 260          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: Y4UB_RHISN (Uncharacterized aminotransferase y4uB OS=Rhizobium sp. (strain NGR234) GN=NGR_a01380 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.314e-13
Identity = 54/161 (33.54%), Postives = 79/161 (49.07%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFN-------VVQTGVHH---ALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVV 478
            IIS    YHG +  +   T  S +  +       +  TGV H     NP      F A     A ++ ++I+     +V  F++E + G GGI     GY  A+   +KK   L IADEV  GF RTGS F G + +G+ PD++T+AKG+ +   PL A +
Sbjct:  147 IISRERGYHGCSVVSGSMTGMSFYHDHMDLPLPQICHTGVPHHYWGANPGETEREFSA---RRAAELDEMIETLGPDNVGAFIAEPVLGTGGITPPPEGYWEAIQAVLKKHDVLLIADEVITGFGRTGSMF-GSQHYGIEPDLITVAKGLTSAYFPLSASI 303          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: Y4QG_RHISN (Uncharacterized aminotransferase y4qG OS=Rhizobium sp. (strain NGR234) GN=NGR_a01910 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.314e-13
Identity = 52/163 (31.90%), Postives = 82/163 (50.31%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVV 478
            AR  TG + I+S  N +HG + G +  T    ++        GV       PY G +GAD +      + L D  +   V A  + E++QG GGI      +L ++ +  +  G L I D++QAG  R G +F+ FE  G+ PD+V ++K I G G+PL  ++
Sbjct:  153 ARKATGRHSIVSFTNGFHGMSLGALAVTGNRYYRDAAGFPPAGVAFM----PYDGYWGADNDTSEYLDKVLADASSGVDVPAAIILETVQGEGGINAARKEWLQSIQRICRSHGILLIVDDIQAGCGRAG-NFFSFEFAGLSPDVVVLSKSISGCGLPLSLLL 310          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ECTB_VIRPA (Diaminobutyrate--2-oxoglutarate transaminase OS=Virgibacillus pantothenticus GN=ectB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.314e-13
Identity = 53/157 (33.76%), Postives = 85/157 (54.14%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL 466
            AR  TG + +IS  NA+HG   G++  T  S +K +     +HH+++    + V   D   Y +  + L D G+   + A  + E++QG GGI   +  +L  +    ++   L I D+VQAG  RTG+ F+ FE  G+ PDIV ++K IG  G+P+
Sbjct:  120 ARKVTGRDTVISFTNAFHGMTIGSLSVTGNS-FKRHGAGVPLHHSVSMPYDKYVNDQDSIAYLE--RFLEDSGSGVALPAAIILETVQGEGGINAASIEWLQKIASICERWDILLIIDDVQAGCGRTGT-FFSFEPAGIAPDIVCLSKSIGGIGLPM 272          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALPB (Succinylornithine transaminase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=astC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.314e-13
Identity = 48/154 (31.17%), Postives = 72/154 (46.75%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q ++   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPSYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRHQALLIFDEVQTGVGRTGE-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALTY (Succinylornithine transaminase OS=Salmonella typhimurium GN=astC PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRHQALLIFDEVQTGVGRTGE-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALPK (Succinylornithine transaminase OS=Salmonella paratyphi A (strain AKU_12601) GN=astC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRHQALLIFDEVQTGVGRTGK-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALPC (Succinylornithine transaminase OS=Salmonella paratyphi C (strain RKS4594) GN=astC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRHQALLIFDEVQTGVGRTGE-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALPA (Succinylornithine transaminase OS=Salmonella paratyphi A GN=astC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRHQALLIFDEVQTGVGRTGK-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
ARGD2_BORPA3.116e-1333.12Acetylornithine aminotransferase 2 OS=Bordetella p... [more]
ARGD2_BORBR3.116e-1333.12Acetylornithine aminotransferase 2 OS=Bordetella b... [more]
Y4UB_RHISN5.314e-1333.54Uncharacterized aminotransferase y4uB OS=Rhizobium... [more]
Y4QG_RHISN5.314e-1331.90Uncharacterized aminotransferase y4qG OS=Rhizobium... [more]
ECTB_VIRPA5.314e-1333.76Diaminobutyrate--2-oxoglutarate transaminase OS=Vi... [more]
ASTC_SALPB5.314e-1331.17Succinylornithine transaminase OS=Salmonella parat... [more]
ASTC_SALTY6.941e-1331.17Succinylornithine transaminase OS=Salmonella typhi... [more]
ASTC_SALPK6.941e-1331.17Succinylornithine transaminase OS=Salmonella parat... [more]
ASTC_SALPC6.941e-1331.17Succinylornithine transaminase OS=Salmonella parat... [more]
ASTC_SALPA6.941e-1331.17Succinylornithine transaminase OS=Salmonella parat... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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