CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ECTB_OCEIH (Diaminobutyrate--2-oxoglutarate transaminase OS=Oceanobacillus iheyensis GN=ectB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.065e-13
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV--AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL 466
            AR  TG + +I   NA+HG   G++  T  S +K N     ++HA++    + V   D   Y   ++  ++   SG    A F+ E++QG GGI      ++  + +  +K   L I D+VQAG  RTG+ F+ FE  G+ PDIV ++K IG  G+P+
Sbjct:  131 ARKVTGRDTVIGFTNAFHGMTIGSLSVTGNS-FKRNGAGIPLNHAISMPFDQYVDEQDSIAY---IERFLEDSGSGVALPAAFILETVQGEGGINAARLEWVKKIEEICRKWDILLIIDDVQAGCGRTGT-FFSFEEAGINPDIVCLSKSIGGVGLPM 283          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALTI (Succinylornithine transaminase OS=Salmonella typhi GN=astC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.065e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATNAFLQGLRELCDRHQALLIFDEVQTGVGRTGE-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PUUE_ECOLI (4-aminobutyrate aminotransferase OS=Escherichia coli (strain K12) GN=puuE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 51/167 (30.54%), Postives = 76/167 (45.51%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTM---GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG-----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR +TG   +I+    +HG    TM   G  A     F      V+H   P    G+   D       ++  D++       +  VA  + E +QG GG        + A+ +   + G + IADEVQ+GFARTG  F   + +   PD++TMAK +  G+PL  VV
Sbjct:  121 ARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIE-------AKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLF-AMDHYADKPDLMTMAKSLAGGMPLSGVV 279          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ECTB_VIBPA (Diaminobutyrate--2-oxoglutarate transaminase OS=Vibrio parahaemolyticus GN=ectB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 49/162 (30.25%), Postives = 84/162 (51.85%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPLGAVV 478
            A+   G + +++  N +HG  AG + AT   + +     +  +  +   P+ G  G DG       + +++  ++G    A  L E++QG GG+   +  +L  + K  K    L I D++QAG  RTG+ F+ FE  G+ PDIVT++K IG  G+P+  V+
Sbjct:  120 AKKVKGRSSVVAFTNGFHGCTAGALAATGNQHHRQGNGSSLTN--VTRIPFEGYAGVDGLAL---FETMLNDNSAGMDKPAAVLLETVQGEGGLNAASNEWLQRLSKICKANDILLIVDDIQAGCGRTGT-FFSFEPSGIEPDIVTLSKSIGGYGLPMAVVL 275          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_HAEDU (Acetylornithine aminotransferase OS=Haemophilus ducreyi GN=argD PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 49/150 (32.67%), Postives = 68/150 (45.33%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQS--NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGA 472
            IISL N++HG    T+ AT Q   +  F     G  H +                A D+           +   + E +QG GG+  L   YL AV    +    L I DEVQ G  RTG+ F  ++   + PDIVT+AKG+  G+P+GA
Sbjct:  131 IISLVNSFHGRTISTLAATGQKLFHQHFFPFTAGFEHLI----------------ANDLNAFKTRIAQNDICAIILEVVQGEGGVCSLDQAYLQAVQGLCQVQDILLIIDEVQTGIGRTGTMF-AYQQFELKPDIVTLAKGLAGGLPIGA 263          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ECTB_STRAW (Diaminobutyrate--2-oxoglutarate transaminase OS=Streptomyces avermitilis GN=ectB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS-GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPL 466
            AR   G   I+S  NA+HG + G++  T  +  +       VH    P P+   F      +    + L D G+     A  + E++QG GGI    P +L A+ +  K+   L I D++Q G  RTG+ F+ FE  GV PDIVT++K I G G+P+
Sbjct:  127 ARKVKGREAIVSFTNAFHGMSLGSLAVTGNAFKRAGAGIPLVHGT--PMPFDNYFDGKVPDFLWFERLLEDQGSGLNKPAAVIVETVQGEGGINVARPEWLRALAELCKRQDMLLIVDDIQMGCGRTGA-FFSFEEAGVTPDIVTVSKSISGYGLPM 280          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SHISS (Succinylornithine transaminase OS=Shigella sonnei (strain Ss046) GN=astC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 47/154 (30.52%), Postives = 72/154 (46.75%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +GV PD++T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------INSASALIDDATCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPDLLTTAKALGGGFPVGALLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD1_BRAJA (Acetylornithine aminotransferase 1 OS=Bradyrhizobium japonicum GN=argD1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 49/154 (31.82%), Postives = 69/154 (44.81%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNP--DPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            II+   A+HG    T+ AT  + +              P  D +  V   D E   K +            AG L E IQG GG+    P +L A+ +   + G L   DEVQ G  RTG  F      GV PD++++AK +G G P+GA++ T
Sbjct:  129 IITFEGAFHGRTLATLAATGSAKYL---------EGFGPPMDGFDQVPHGDIEAVKKAI--------GPQTAGILIEPIQGEGGVRSATPAFLKALRQLCDEKGLLLAFDEVQTGMGRTGDLF-AHRRTGVTPDVMSLAKALGGGFPIGAILAT 264          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: GABT_ECOLI (4-aminobutyrate aminotransferase OS=Escherichia coli (strain K12) GN=gabT PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 50/161 (31.06%), Postives = 75/161 (46.58%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSN---WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAV 475
            AR  T  +  I+   AYHG    T+  T + N       ++   V+ AL P P  G+  ++ +  A   +   +      +A  + E +QG GG    +P ++  +     + G + IADEVQ+G  RTG+ F   E  GV PD+ T AK I  G PL  V
Sbjct:  122 ARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIAGGFPLAGV 279          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ECTB_MARHA (Diaminobutyrate--2-oxoglutarate transaminase OS=Marinococcus halophilus GN=ectB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPL 466
            AR  TG  +++S  N +HG   G +  T     KF     G+  +         F  +     + +++ +D G SG    A F+ E++QG GG+   +  +L ++ K  ++     I D+VQAG  RTG+ F+ FE  G+ PD V ++K I GNG PL
Sbjct:  125 ARKVTGRTNVVSFTNGFHGMTIGALSVTGN---KFKRNGAGMPLSNTSTLPYDQFLKESNNSIEYIENFLDNGGSGLDKPAAFIVETVQGEGGLNAASSEWLRSIEKICRERDIKLILDDVQAGVGRTGT-FFSFEPAGIKPDFVCLSKSIGGNGSPL 278          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
ECTB_OCEIH9.065e-1333.54Diaminobutyrate--2-oxoglutarate transaminase OS=Oc... [more]
ASTC_SALTI9.065e-1331.17Succinylornithine transaminase OS=Salmonella typhi... [more]
PUUE_ECOLI1.184e-1230.544-aminobutyrate aminotransferase OS=Escherichia co... [more]
ECTB_VIBPA1.184e-1230.25Diaminobutyrate--2-oxoglutarate transaminase OS=Vi... [more]
ARGD_HAEDU1.184e-1232.67Acetylornithine aminotransferase OS=Haemophilus du... [more]
ECTB_STRAW1.546e-1233.76Diaminobutyrate--2-oxoglutarate transaminase OS=St... [more]
ASTC_SHISS1.546e-1230.52Succinylornithine transaminase OS=Shigella sonnei ... [more]
ARGD1_BRAJA1.546e-1231.82Acetylornithine aminotransferase 1 OS=Bradyrhizobi... [more]
GABT_ECOLI2.019e-1231.064-aminobutyrate aminotransferase OS=Escherichia co... [more]
ECTB_MARHA2.019e-1231.65Diaminobutyrate--2-oxoglutarate transaminase OS=Ma... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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