CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECO8A (Succinylornithine transaminase OS=Escherichia coli O8 (strain IAI1) GN=astC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 46/154 (29.87%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYND-------------INSASALIDDSTCAVIV----EPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG-ELYAYMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECO24 (Succinylornithine transaminase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=astC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 46/154 (29.87%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYND-------------INSASALIDDSTCAVIV----EPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG-ELYAYMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_YARLI (Acetylornithine aminotransferase, mitochondrial OS=Yarrowia lipolytica GN=ARG8 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 47/155 (30.32%), Postives = 70/155 (45.16%), Query Frame = 2
Query:   26 DIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            + ++   A+HG   G +  T    ++  F  +  GV   +  DP                 DLI   T G +     E +QG GG+ +    +L A+     + G + I DE+Q G  RTG   W  +   V PDI+TMAK +GNG P+GA + T
Sbjct:  143 EFVNFEKAFHGRTMGALSVTPNPKYQAPFAPLVPGVKTGVYNDP--------------KAADLITEKTCGVIV----EPVQGEGGVYKANDEFLQALRNKCDEVGAMLIFDEIQCGLGRTG-RLWAHDK--VHPDILTMAKALGNGFPIGATMVT 276          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_SHEON (Acetylornithine aminotransferase OS=Shewanella oneidensis GN=argD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 47/156 (30.13%), Postives = 71/156 (45.51%), Query Frame = 2
Query:   23 NDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            ++II+   A+HG    T+    Q+ +   F      + H     P+  V               ++   S      + E +QG GGII+  P +L AV +   K   L I DEVQ G  RTG   + +    +VPDI+T AK +G G P+ A++TT
Sbjct:  131 DEIIAFDKAFHGRTFFTVSVGGQAAYSDGFGPKPQSITHL----PFNDVAA-------------LEAAVSDKTCAIMLEPLQGEGGIIDADPAFLKAVRELANKHNALVIFDEVQTGVGRTG-ELYAYMGTDIVPDILTTAKALGGGFPIAAMLTT 268          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ECTB_NOCFA (Diaminobutyrate--2-oxoglutarate transaminase OS=Nocardia farcinica GN=ectB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 54/162 (33.33%), Postives = 81/162 (50.00%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPLGAVV 478
            AR  TG   ++S  NA+HG   G +  T  +  +       VH A  P  Y G F      + + ++ ++D  +SG    A  + E++QG GGI      +L  + +   +   L I D+VQ G  RTG  F+ FE  G+ PDIVT++K IG  G+PL  V+
Sbjct:  125 ARKVTGRETVLSFTNAFHGMTLGALSVTGNAAKRAGAGVPLVHAAHMP--YDGYFDNTTADF-QWMERVLDDTSSGFDRPAAVIVETVQGEGGINVARVEWLQHLAQLCAEREILLIVDDVQMGCGRTGP-FFSFEVAGITPDIVTLSKSIGGYGLPLALVL 282          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ECTB_BACPA (Diaminobutyrate--2-oxoglutarate transaminase OS=Bacillus pasteurii GN=ectB PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 54/161 (33.54%), Postives = 82/161 (50.93%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG-----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL 466
            AR  TG  +IIS  NA+HG   G++  +  S+ + N     + + ++  PY   F         E Y +D    +D       A  + E++QG GGI   +  +L  + K  ++   L I D+VQAG  RTG+ F+ FE  G+ PDIV ++K IG  G+PL
Sbjct:  129 ARKVTGRQNIISFTNAFHGMTLGSLSISGNSSIR-NGAGVPLTNTISM-PYDTFFKNGNAIDYLEQYLEDTGSGVDLP-----AAMILETVQGEGGINAASFEWLRGIEKLCRRYDILLIIDDVQAGCGRTGT-FFSFEPAGIQPDIVCLSKSIGGYGLPL 281          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECO7I (Succinylornithine transaminase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 48/160 (30.00%), Postives = 74/160 (46.25%), Query Frame = 2
Query:   17 GCND--IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            GC+   I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +GV PD++T AK +G G P+GA++ T
Sbjct:  125 GCHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------INSASALIDDSTCAVIV----EPIQGEGGVVPASNAFLHGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_CITK8 (Succinylornithine transaminase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=astC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 47/162 (29.01%), Postives = 75/162 (46.30%), Query Frame = 2
Query:    5 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            R  T  + I++ +NA+HG    T+ A  Q  +   F  +   + HA+  D                  +LID  T   +     E +QG GG++     +L  + +   +   L I DEVQ G  RTG   + +  +GV PD++T AK +G G P+GA++ T
Sbjct:  123 RFGTHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAVYND-------------LNAASELIDDTTCAVIV----EPMQGEGGVLPATKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPDLLTTAKALGGGFPIGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARUC_PSEAE (Succinylornithine transaminase/acetylornithine aminotransferase OS=Pseudomonas aeruginosa GN=aruC PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 46/155 (29.68%), Postives = 70/155 (45.16%), Query Frame = 2
Query:   26 DIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            +II+  N++HG    T+    Q  +   F     G+ H     PY  +             + +    S      + E IQG GG++     YL    K   +   L + DEVQ+G  R G  F  +  +GVVPDI++ AK +G G P+GA++TT
Sbjct:  133 EIIAASNSFHGRTLFTVNVGGQPKYSDGFGPKFEGITHV----PYNDL-------------EALKAAISDKTCAVVLEPIQGEGGVLPAQQAYLEGARKLCDEHNALLVFDEVQSGMGRVGELF-AYMHYGVVPDILSSAKSLGGGFPIGAMLTT 269          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_SALTI (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Salmonella typhi GN=argD PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            II+ +NA+HG +  T+    Q  +              P P   +     +++A  V+ ++D     H    + E IQG GG+    P +L  +     K   L + DEVQ G  RTG  F  +  +GV PDI+T AK +G G P+ A++TT
Sbjct:  134 IIAFQNAFHGRSLFTVSVGGQPKYS---------DGFGPKPADIIHVPFNDLHA--VKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDKHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDILTSAKALGGGFPVSAMLTT 269          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
ASTC_ECO8A3.445e-1229.87Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO243.445e-1229.87Succinylornithine transaminase OS=Escherichia coli... [more]
ARGD_YARLI3.445e-1230.32Acetylornithine aminotransferase, mitochondrial OS... [more]
ARGD_SHEON3.445e-1230.13Acetylornithine aminotransferase OS=Shewanella one... [more]
ECTB_NOCFA4.499e-1233.33Diaminobutyrate--2-oxoglutarate transaminase OS=No... [more]
ECTB_BACPA4.499e-1233.54Diaminobutyrate--2-oxoglutarate transaminase OS=Ba... [more]
ASTC_ECO7I4.499e-1230.00Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_CITK84.499e-1229.01Succinylornithine transaminase OS=Citrobacter kose... [more]
ARUC_PSEAE4.499e-1229.68Succinylornithine transaminase/acetylornithine ami... [more]
ARGD_SALTI4.499e-1230.92Acetylornithine/succinyldiaminopimelate aminotrans... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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