CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: RHBA_RHIME (Diaminobutyrate--2-oxoglutarate aminotransferase OS=Rhizobium meliloti GN=rhbA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.106e-18
Identity = 59/169 (34.91%), Postives = 87/169 (51.48%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT--GVHHALNPDPYRGVFGADG--------EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            A+  TG  D++S R AYHG + G++        K +V Q   G H    P  YR  FG  G        E + + ++D    G     A  + E++QG GG+I     +L AV +  +  G   I DEVQ+G  RTGS F+ F+  G++PD+V ++K IG G+PL  V+
Sbjct:  151 AKTATGRTDLVSFRGAYHGMSQGSLSLMGSLGPKASVGQLVPGAHFFPYPYAYRCPFGRGGNETATLAAEYFERALRD--PEGGINRPAAVILEAVQGEGGVIPAPVEWLRAVRRVTRDLGIPLIVDEVQSGVGRTGS-FYAFQKAGIIPDVVVLSKAIGGGLPLAVVI 316          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: AGT2L_CAEEL (Alanine--glyoxylate aminotransferase 2-like OS=Caenorhabditis elegans GN=T01B11.2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.106e-18
Identity = 65/182 (35.71%), Postives = 90/182 (49.45%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT-----GVHHALNPDPYRGVFG-------------ADGEMYAKDVQDLIDFGTSGH--VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH--GVVPDIVTMAKGIGNGIPLGAVVT 481
            AR YT   D I + +AYHG+   TM     S +KF+   T      VH A  PD +RG                A G+ Y+ DV+ +++   S    VA + +E++Q  GG +     Y   V   ++  GGL I DEVQ GF R G  +W  + +  G +PDIVTM K +GNG P+ AV T
Sbjct:  142 ARDYTKHKDAIVIEHAYHGHVTTTMEL---SPYKFDHGSTVSQPDWVHVAPCPDVFRGKHRLADNELTNEDKLYAAGKQYSDDVKSILNDVESRQCGVAAYFAEALQSCGGQVIPPKDYFKDVATHVRNHGGLMIIDEVQTGFGRIGRKYWAHQLYDDGFLPDIVTMGKPMGNGFPVSAVAT 320          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: YFZ7_SCHPO (Uncharacterized aminotransferase C1039.07c OS=Schizosaccharomyces pombe GN=SPAC1039.07c PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.886e-18
Identity = 59/167 (35.33%), Postives = 89/167 (53.29%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGAT-AQSNWKFNVVQTGVHHALNPDPYRGVF-GADGEMYAKDVQD----LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            A++YT   + ++  +++HG   G    T A +   +     G +    P+P    F  A G    +   D    ++D  ++G +A  + E+I   GGIIEL  GYL A+ K  ++ G L I DE Q G  RTGS F  FE HG+VPDI+T++K +G G  L AV+T+
Sbjct:  129 AKVYTNKYECVAFSSSWHGVTGGAASLTFAAARRGYGPALPGSYTIPEPNPKLSPFRDAKGNYDWQKELDYSFYMLDKQSTGSLACMIVETILSTGGIIELPQGYLKALKKKCEERGMLLIIDEAQTGIGRTGSMF-SFEHHGIVPDILTLSKSLGAGTALAAVITS 294          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_LISMO (Acetylornithine aminotransferase OS=Listeria monocytogenes GN=argD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.886e-18
Identity = 59/161 (36.65%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQS--NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR YTG   II+   ++HG   G+M AT Q+  +  F  +  G  +     PY  +     E +  ++ +        + A  + E IQ  GG+I     +L  V    KK G L I DEVQ G  RTG+  +GFE  G+ PDI T+AKG+GNG+P+GA+V
Sbjct:  105 ARKYTGKEKIITFEKSFHGRTFGSMSATGQAKIHQGFGELVPGFTYV----PYNDI-----EAFRAEIDE--------NTAAVMLEVIQAEGGVIPANAAFLLEVQLLCKKMGALLIIDEVQTGLGRTGT-LYGFEQIGLDPDIFTLAKGLGNGLPIGAMV 247          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_BACSU (Acetylornithine aminotransferase OS=Bacillus subtilis GN=argD PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.217e-18
Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR  TG   II+   ++HG     M AT Q   K  F  +  G H+    DP    F A GE               G +A  + E++QG GG+   +  +L AV    K+   L I DE+Q G  RTG  F  +E  G+ PDI+T+AKG+GNG P+GAV+
Sbjct:  106 ARKATGKTKIITFLQSFHGRTYAGMAATGQDKIKTGFGPMLGGFHYLPYNDP--SAFKALGE--------------EGDIAAVMLETVQGEGGVNPASAEFLSAVQSFCKEKQALLIIDEIQTGIGRTGKGF-AYEHFGLSPDIITVAKGLGNGFPVGAVI 249          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_LISIN (Acetylornithine aminotransferase OS=Listeria innocua GN=argD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.487e-18
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQS--NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR YTG   II+   ++HG   G+M AT Q+  +  F  +  G  +     PY  +     E +  ++ +        + A  + E IQG GG+I     +L  V    KKAG L I DEVQ G  RTG+ F GF+   + PDI T+AKG+GNG+P+GA+V
Sbjct:  105 ARKYTGKEKIITFEKSFHGRTFGSMSATGQAKIHQGFGRLVPGFTYV----PYNDI-----ESFKTELDE--------NTAAVMLEVIQGEGGVIPGNAAWLMEVQMLCKKAGALLIIDEVQTGLGRTGTLF-GFQQTFLDPDIFTLAKGLGNGLPIGAMV 247          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_THETN (Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.359e-18
Identity = 56/150 (37.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            II+ +N++HG   G + AT Q  +         H    P     +      +   D++ L +      V   + E IQG GGI E  P Y+ AV K   +   L I DEVQ G  RTG  F G+E +GVVPDI+T+AKG+G G P+GA+V
Sbjct:  126 IITAKNSFHGRTFGALTATGQEKY---------HKGFGP-----LLAGFKYVPLNDIEALYE-AVDDEVCAIMLEVIQGEGGIHEATPEYVKAVRKICDENDLLFILDEVQTGIGRTGKLF-GYEHYGVVPDIMTLAKGLGGGFPIGAIV 259          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_XYLFT (Acetylornithine aminotransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=argD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.222e-17
Identity = 52/150 (34.67%), Postives = 78/150 (52.00%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            I++ R ++HG   G + ATAQ  ++              + Y  + G    +    ++ L      G VA  + E IQG GG++ +APGYL  V     + G L + DE+Q G  RTG+ F  +    VVPDIVT+AKG+G G P+GA++
Sbjct:  134 IVTFRGSFHGRTLGAVTATAQPKYQ--------------EGYEPLPGGFRYVDFNHIEALEAAMVGGDVAAVMLEPIQGEGGVMPIAPGYLAQVRALCDRYGALLVLDEIQCGMGRTGTLF-AYWQEEVVPDIVTLAKGLGGGFPIGAML 268          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: DAT_ACIBA (Diaminobutyrate--2-oxoglutarate aminotransferase OS=Acinetobacter baumannii GN=dat PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 57/167 (34.13%), Postives = 85/167 (50.90%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAV 475
            A+ YTG + +IS    YHG   G++  T   + K   N +  GV     P  YR   G  GE        Y ++  + ++ G +   A  L E+IQG GG++     +L  + +  +K   + I DEVQAGFAR+G  F  FE  G+ PD+V M+K +G G+PL  +
Sbjct:  136 AKTYTGRSSVISFSGGYHGMTHGSLAMTGNLSAKNAVNGLMPGVQFMPYPHEYRCPLGLGGEAGVDALTYYFENFIEDVESGVTKPAAVIL-EAIQGEGGVVTAPVKWLQKIREVTEKHNIVLILDEVQAGFARSGKMF-AFEHAGIEPDVVVMSKAVGGGLPLAVL 300          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_PYRHO (Acetylornithine/acetyl-lysine aminotransferase OS=Pyrococcus horikoshii GN=argD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.645e-17
Identity = 60/162 (37.04%), Postives = 80/162 (49.38%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 481
            ARLYTG  +II++ NA+HG   G + AT +  +K  F  +  G  H     P+  V  A   +             S   A  + E IQG  G+I     ++ A+    +  G L I DEVQ G  RTG  F   E + + PDIVTM KGIGNGIP+G  +T
Sbjct:  101 ARLYTGRKEIIAMVNAFHGRTMGALSATWKPKYKKDFEPLVPGFKHI----PFNDVEAAKEAI-------------SKETAAVIVEPIQGESGVIPAKKEFMKALRDLTEDVGALLIVDEVQTGL-RTGK-FLAVEHYKIEPDIVTMGKGIGNGIPVGLTLT 243          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
RHBA_RHIME1.106e-1834.91Diaminobutyrate--2-oxoglutarate aminotransferase O... [more]
AGT2L_CAEEL1.106e-1835.71Alanine--glyoxylate aminotransferase 2-like OS=Cae... [more]
YFZ7_SCHPO1.886e-1835.33Uncharacterized aminotransferase C1039.07c OS=Schi... [more]
ARGD_LISMO1.886e-1836.65Acetylornithine aminotransferase OS=Listeria monoc... [more]
ARGD_BACSU3.217e-1836.65Acetylornithine aminotransferase OS=Bacillus subti... [more]
ARGD_LISIN5.487e-1837.27Acetylornithine aminotransferase OS=Listeria innoc... [more]
ARGD_THETN9.359e-1837.33Acetylornithine aminotransferase OS=Thermoanaeroba... [more]
ARGD_XYLFT1.222e-1734.67Acetylornithine aminotransferase OS=Xylella fastid... [more]
DAT_ACIBA2.723e-1734.13Diaminobutyrate--2-oxoglutarate aminotransferase O... [more]
ARGD_PYRHO4.645e-1737.04Acetylornithine/acetyl-lysine aminotransferase OS=... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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