CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SHIB3 (Succinylornithine transaminase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=astC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.710e-11
Identity = 46/154 (29.87%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +GV PD++T AK +G   P+GA++TT
Sbjct:  131 IMAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------INSASALIDDATCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHYGVTPDLLTTAKALGGDFPVGALLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_SALTY (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Salmonella typhimurium GN=argD PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.710e-11
Identity = 46/152 (30.26%), Postives = 71/152 (46.71%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            II+  NA+HG +  T+    Q  +              P P   +     +++A  V+ ++D     H    + E IQG GG+    P +L  +     +   L + DEVQ G  RTG  F  +  +GV PDI+T AK +G G P+ A++TT
Sbjct:  134 IIAFHNAFHGRSLFTVSVGGQPKYS---------DGFGPKPADIIHVPFNDLHA--VKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDILTSAKALGGGFPVSAMLTT 269          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_PASMU (Acetylornithine aminotransferase OS=Pasteurella multocida GN=argD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.710e-11
Identity = 47/152 (30.92%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            II+ + ++HG    T+    Q+ +              P P   V     ++ A  VQ ++D  T   +     E IQG  GI+  +  +L  + +   +   L I DEVQ G  RTG + + +  + VVPDI+T AK +GNG P+GA++TT
Sbjct:  130 IIAFKQSFHGRTLFTVSVGGQAKYS---------DGFGPKPADIVHVPFNDLAA--VQAVMDENTCAVIV----EPIQGESGILPASQDFLQGLRELCDQHNALLIFDEVQTGVGRTG-YLYAYMKYEVVPDILTSAKALGNGFPIGAMLTT 265          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_NEUCR (Acetylornithine aminotransferase, mitochondrial OS=Neurospora crassa GN=arg-8 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.710e-11
Identity = 48/156 (30.77%), Postives = 71/156 (45.51%), Query Frame = 2
Query:   26 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-----EAHGVVPDIVTMAKGIGNGIPLGAVV 478
            +I+  +NA+HG   G++ AT   N K+      +        Y  +      +  K    ++             E IQG GG++     +L A+ K  ++ G L   DE+Q G ARTG+ FW       EAH   PDI+T AK IGNG P+ A +
Sbjct:  188 EIVCFQNAFHGRTMGSLSATP--NPKYQAPFAPMVPGFKVGTYNDIAAIPSLVTEKTCSVIV-------------EPIQGEGGVMPATEEFLVALGKRCREVGALLHYDEIQCGLARTGT-FWAHSSLPKEAH---PDILTTAKAIGNGFPIAATI 324          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_ARCFU (Acetylornithine aminotransferase OS=Archaeoglobus fulgidus GN=argD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.710e-11
Identity = 46/158 (29.11%), Postives = 77/158 (48.73%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLG 469
            AR  TG    +S    +HG   G +  T +  ++  F  + + V  A   +P             + ++ ++D  T    A  + E +QG  G+      ++ A+ +  +K G L I DEVQ GF RTG  F   + +G+ PD++TMAK +G+G+P+G
Sbjct:  113 ARRATGRKKFVSFTGDFHGRTMGALSVTHKEKFRKPFEPLVSPVEFAEFNNP-------------ESLEKVVDEET----AAVIVELVQGEAGVYPADREFVKAIEELREKYGFLLIVDEVQTGFGRTGRWF-AKDHYGIEPDMITMAKAMGSGVPIG 252          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECOUT (Succinylornithine transaminase OS=Escherichia coli (strain UTI89 / UPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 46/154 (29.87%), Postives = 70/154 (45.45%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   +    +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------INSASALIDDATCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYACMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECOL6 (Succinylornithine transaminase OS=Escherichia coli O6 GN=astC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 46/154 (29.87%), Postives = 70/154 (45.45%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   +    +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------INSASALIDDATCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYACMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECOL5 (Succinylornithine transaminase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 46/154 (29.87%), Postives = 70/154 (45.45%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   +    +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------INSASALIDDATCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYACMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECOK1 (Succinylornithine transaminase OS=Escherichia coli O1:K1 / APEC GN=astC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 46/154 (29.87%), Postives = 70/154 (45.45%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   +    +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------INSASALIDDATCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYACMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECO81 (Succinylornithine transaminase OS=Escherichia coli O81 (strain ED1a) GN=astC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 46/154 (29.87%), Postives = 70/154 (45.45%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   +    +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------INSASALIDDATCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYACMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
ASTC_SHIB31.710e-1129.87Succinylornithine transaminase OS=Shigella boydii ... [more]
ARGD_SALTY1.710e-1130.26Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_PASMU1.710e-1130.92Acetylornithine aminotransferase OS=Pasteurella mu... [more]
ARGD_NEUCR1.710e-1130.77Acetylornithine aminotransferase, mitochondrial OS... [more]
ARGD_ARCFU1.710e-1129.11Acetylornithine aminotransferase OS=Archaeoglobus ... [more]
ASTC_ECOUT2.233e-1129.87Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOL62.233e-1129.87Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOL52.233e-1129.87Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOK12.233e-1129.87Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO812.233e-1129.87Succinylornithine transaminase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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