CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: GSA_SYNSC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain CC9605) GN=hemL PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 2
Query:    5 RLYTGCNDIISLRNAYHGNA------AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIVTMAKGIGNGIPLGA 472
            R YTG + +I     YHG+A      AG+  AT        V ++   + L   PY  +  A   ++A++ +          +AG + E I G  G I+  PG+L  + +  K+ G L + DEV  GF  +   + G +AH GV PD+ TM K IG G+P+GA
Sbjct:  129 RAYTGRDKVIKFEGCYHGHADMFLVKAGSGVATLGLPDSPGVPRSTTANTLTA-PYNDL-EAVKALFAENPE---------AIAGVILEPIVGNAGFIQPEPGFLEGLRELTKEHGALLVFDEVMTGFRIS---YGGAQAHFGVTPDLTTMGKVIGGGLPVGA 277          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_BRUSU (Acetylornithine aminotransferase OS=Brucella suis GN=argD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 52/160 (32.50%), Postives = 68/160 (42.50%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG--------HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            II+   A+HG    T+ A  Q+                   Y   FG   E +     D + FG             AG L E IQG GG+      +L  V +   + G L + DEVQ G  RTG  F   E  G+ PDI+ +AKGIG G P+GA + T
Sbjct:  127 IITFEGAFHGRTLATIAAGGQAK------------------YLEGFGPKVEGF-----DQVPFGDEAALRAAITPETAGILLEPIQGEGGLRAFPEEFLRLVRQICDENGLLLLLDEVQTGVGRTGKLF-AHEWAGIRPDIMAIAKGIGGGFPIGACLAT 262          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_BRUME (Acetylornithine aminotransferase OS=Brucella melitensis GN=argD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 52/160 (32.50%), Postives = 68/160 (42.50%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG--------HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            II+   A+HG    T+ A  Q+                   Y   FG   E +     D + FG             AG L E IQG GG+      +L  V +   + G L + DEVQ G  RTG  F   E  G+ PDI+ +AKGIG G P+GA + T
Sbjct:  127 IITFEGAFHGRTLATIAAGGQAK------------------YLEGFGPKVEGF-----DQVPFGDEAALRAAITPETAGILLEPIQGEGGLRAFPEEFLRLVRQICDENGLLLLLDEVQTGVGRTGKLF-AHEWAGIRPDIMAIAKGIGGGFPIGACLAT 262          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_BUCAP (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=argD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   23 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            N IIS  N++HG    T+    Q+ +              P P   +     E+    V+ +ID  T   V     E IQG GGI+     ++  +     K   L I DE+Q G  RT S  + +E + V PDI+T+AK +G+G P+ A +TT
Sbjct:  132 NKIISFYNSFHGRTFFTVSVGGQAKYS---------DFFGPKPPAIMHAKFNEI--NSVKSIIDDNTCAVVM----ELIQGEGGIVPADVAFVREIRDLCYKYNALLIFDEIQTGIGRT-SKLYAYEHYEVQPDILTIAKSLGSGFPISATLTT 269          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: OAT_SCHPO (Probable ornithine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC21C3.08c PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 52/155 (33.55%), Postives = 76/155 (49.03%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF-GTSG-HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+S  + +HG   G +  +   + + N      +    P+    + GAD  +   +++DL  +  T G  VA FL E IQG  G++    GYL   YK  K    L IADEVQ G ARTG      E   V PD+V + K I  G+ P+ AV+++
Sbjct:  143 ILSCVDNFHGRTMGIISMSTDPDARDN------YGPYLPNVGPKISGADRVLRYNNIEDLKYYLDTFGPKVAAFLVEPIQGEAGVMVPDDGYLEEAYKLCKAHNVLFIADEVQTGVARTGKMLC-IEHSNVKPDVVILGKAISGGVYPVSAVLSS 290          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_GLOVI (Acetylornithine aminotransferase OS=Gloeobacter violaceus GN=argD PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 48/151 (31.79%), Postives = 70/151 (46.36%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAV 475
            II    ++HG    T+ AT Q  ++  F+ +  G  H     PY      D E     V D          A  L E IQG GG++     +   + +   +   L + DEVQ G  RTG  F G+E  G+ PD+ T+AK +G G+P+GA+
Sbjct:  128 IICAHQSFHGRTMATVTATGQPKYQKHFHPLVPGFVHV----PYN-----DFEALRAQVTDA--------TAAVLIEPIQGEGGVVPGDVEFFQKLRRFCSERRILLMLDEVQTGMGRTGRLF-GYEHLGIEPDVFTLAKALGGGVPIGAL 260          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
GSA_SYNSC4.974e-1132.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
ARGD_BRUSU4.974e-1132.50Acetylornithine aminotransferase OS=Brucella suis ... [more]
ARGD_BRUME4.974e-1132.50Acetylornithine aminotransferase OS=Brucella melit... [more]
ARGD_BUCAP6.496e-1131.17Acetylornithine/succinyldiaminopimelate aminotrans... [more]
OAT_SCHPO8.485e-1133.55Probable ornithine aminotransferase OS=Schizosacch... [more]
ARGD_GLOVI8.485e-1131.79Acetylornithine aminotransferase OS=Gloeobacter vi... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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