CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_METTH (Acetylornithine aminotransferase OS=Methanobacterium thermoautotrophicum GN=argD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.066e-17
Identity = 58/161 (36.02%), Postives = 81/161 (50.31%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR +TG ++II+  N++HG    T+ AT Q  +   F  +  G  H     PY G  GA  +    +             A  + E +QG GG+I    GYL  V +  ++   L I DEVQ GF RTG+ F   +  GV PDI T+AK +G G P+GAV+
Sbjct:  116 ARKFTGKSEIIAAENSFHGRTLATVTATGQKKYSEPFRPLPEGFKHV----PY-GDIGAMADAVGDET------------AAIILEPVQGEGGVIIPPEGYLKDVQELARQNDVLLILDEVQTGFGRTGAMF-ASQLFGVEPDITTVAKAMGGGYPIGAVL 258          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_BACST (Acetylornithine aminotransferase OS=Bacillus stearothermophilus GN=argD PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.066e-17
Identity = 55/159 (34.59%), Postives = 80/159 (50.31%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR +TG + +I+ R ++HG    TM AT Q           VH    P     +      +   DV D +    S  VA  + E +QG GG+  + P +L    +  ++ G L I DEVQ G  RTG  F  ++   V PDI+T AKG+G+GIP+GA++
Sbjct:  106 ARKHTGRHKVITFRQSFHGRTFATMAATGQEK---------VHSGFGP-----LLPEFIHLPLNDV-DALKQAMSEEVAAVMLEVVQGEGGVRPVDPAFLQTASELCQQHGALLIIDEVQTGIGRTGKPF-AYQHFDVEPDIITAAKGLGSGIPVGAMI 248          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: GABT_MYCTU (4-aminobutyrate aminotransferase OS=Mycobacterium tuberculosis GN=gabT PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.923e-17
Identity = 63/169 (37.28%), Postives = 87/169 (51.48%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYRG-----VFGADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE--AHGVVPDIVTMAKGIGNGIPLGAV 475
            AR YTG   +++  +AYHG    TM  TA+S      F      ++ A    PYR          +GE+ A     +ID    + ++A  + E IQG GG I  A G+LPA+    +K   + IADEVQ GFARTG+ F        G+ PD++  AKGI +G+PL AV
Sbjct:  137 ARSYTGKPAVVAFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPLSYPYRDGLLDKQLATNGELAAARAIGVIDKQVGANNLAALVIEPIQGEGGFIVPAEGFLPALLDWCRKNHVVFIADEVQTGFARTGAMFACEHEGPDGLEPDLICTAKGIADGLPLSAV 305          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: GABT_MYCBO (4-aminobutyrate aminotransferase OS=Mycobacterium bovis GN=gabT PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.923e-17
Identity = 63/169 (37.28%), Postives = 87/169 (51.48%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYRG-----VFGADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE--AHGVVPDIVTMAKGIGNGIPLGAV 475
            AR YTG   +++  +AYHG    TM  TA+S      F      ++ A    PYR          +GE+ A     +ID    + ++A  + E IQG GG I  A G+LPA+    +K   + IADEVQ GFARTG+ F        G+ PD++  AKGI +G+PL AV
Sbjct:  137 ARSYTGKPAVVAFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPLSYPYRDGLLDKQLATNGELAAARAIGVIDKQVGANNLAALVIEPIQGEGGFIVPAEGFLPALLDWCRKNHVVFIADEVQTGFARTGAMFACEHEGPDGLEPDLICTAKGIADGLPLSAV 305          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_BACCR (Acetylornithine aminotransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=argD PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.035e-16
Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR +TG + +++ + ++HG   GTM AT Q   K  F  +     H     P+  +   +  M             +  VA  + E +QG GG+I +   +L  +     K G L I DEVQ G  RTG+ F  +E  G+ PDIVT+AK +GNGIP+GA++
Sbjct:  107 ARKHTGKSLVVTCQQSFHGRTFGTMSATGQDKVKEGFGPLLPSFLHI----PFNDIKALEEVM-------------NEEVAAVMVEVVQGEGGVIPVDLSFLKEIETLCNKFGSLFIIDEVQTGIGRTGTLF-AYEQVGIEPDIVTVAKALGNGIPVGAMI 249          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_PYRKO (Acetylornithine aminotransferase OS=Pyrococcus kodakaraensis GN=argD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.351e-16
Identity = 59/162 (36.42%), Postives = 83/162 (51.23%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 481
            ARL TG ++I+++ NA+HG   G++ AT +  ++  F  +  G  H     P+  V  A  E   K+             A  + E IQG GGI+     ++  +    +  G L IADEVQ+G  RTG  F   E +GV PDIVTM KGIGNG P+   +T
Sbjct:  101 ARLATGRSEIVAMTNAFHGRTLGSLSATWKKKYREGFGPLVPGFKHI----PFNNVEAAK-EAITKET------------AAVIFEPIQGEGGIVPADEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYGVRPDIVTMGKGIGNGFPVSLTLT 243          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ERWCT (Putrescine aminotransferase OS=Erwinia carotovora subsp. atroseptica GN=patA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.305e-16
Identity = 60/154 (38.96%), Postives = 77/154 (50.00%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+  ++  F  +  G HH          FG D     K VQ     G    VA  + E IQG GG+I     YLPAV     + G L I DEVQ G  RTG  F   E +GV PDI+ +AK +G G+ P+GA V T
Sbjct:  174 IAATGAFHGKSLGALSATAKPAFRRPFMPLLPGFHHV--------AFG-DISAMRKQVQQCQKTGDD--VAAIILEPIQGEGGVIVPPENYLPAVRALCDEVGALLILDEVQTGMGRTGKMF-ACEHYGVQPDILCLAKALGGGVMPIGATVAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_PYRFU (Acetylornithine/acetyl-lysine aminotransferase OS=Pyrococcus furiosus GN=argD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.305e-16
Identity = 57/162 (35.19%), Postives = 81/162 (50.00%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 481
            ARLYTG  +II++ NA+HG   G + AT +  ++  F  +  G  H     P+  V  A   +  +              A  + E IQG GG++     ++  +    +  G L IADEVQ+G  RTG  F   E + V PDIVTM KGIGNG+P+   +T
Sbjct:  101 ARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFKPLVPGFKHI----PFNDVEAAKEAITTE-------------TAAVIFEPIQGEGGVVPANEEFVKTLRDLTEDKGALLIADEVQSGL-RTGK-FLAIEHYKVEPDIVTMGKGIGNGVPVSLTLT 243          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_PYRAB (Acetylornithine/acetyl-lysine aminotransferase OS=Pyrococcus abyssi GN=argD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.305e-16
Identity = 59/162 (36.42%), Postives = 81/162 (50.00%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 481
            ARLYTG  +II++ NA+HG   G + AT +S +K  F  +  G  H     P+  V  A   +             +   A  + E IQG  GII     ++  +    +  G L IADEVQ+G  RTG  F   E + V PDIVT+ KGIGNG+P+   +T
Sbjct:  101 ARLYTGRKEIIAMTNAFHGRTMGALSATWKSKYKKDFEPLVPGFKHI----PFNDVEAAKEAI-------------TRTTAAVIFEPIQGESGIIPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAVEHYKVEPDIVTLGKGIGNGVPVSLTLT 243          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_METMA (Acetylornithine aminotransferase OS=Methanosarcina mazei GN=argD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.305e-16
Identity = 54/158 (34.18%), Postives = 75/158 (47.47%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAV 475
            AR+ TG +  ++  +++HG   G +  T              H ++  DP+     +          D I    S   A  + E IQG GG+    PGYL  V +   + G L I DEVQ GF RTG+ F   E  GV PDI++MAK IG G P+GA+
Sbjct:  128 ARVATGKSAFVAAEHSFHGRTIGALSVT--------------HKSMYRDPFMPPVSSKTSFVPYSDADAIRKAISEDTAAVVLEPIQGEGGVNVPDPGYLKEVREICDETGTLLIFDEVQTGFGRTGTWFCK-EQFGVEPDIMSMAKAIGGGFPMGAI 270          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
ARGD_METTH6.066e-1736.02Acetylornithine aminotransferase OS=Methanobacteri... [more]
ARGD_BACST6.066e-1734.59Acetylornithine aminotransferase OS=Bacillus stear... [more]
GABT_MYCTU7.923e-1737.284-aminobutyrate aminotransferase OS=Mycobacterium ... [more]
GABT_MYCBO7.923e-1737.284-aminobutyrate aminotransferase OS=Mycobacterium ... [more]
ARGD_BACCR1.035e-1634.16Acetylornithine aminotransferase OS=Bacillus cereu... [more]
ARGD_PYRKO1.351e-1636.42Acetylornithine aminotransferase OS=Pyrococcus kod... [more]
PAT_ERWCT2.305e-1638.96Putrescine aminotransferase OS=Erwinia carotovora ... [more]
ARGD_PYRFU2.305e-1635.19Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD_PYRAB2.305e-1636.42Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD_METMA2.305e-1634.18Acetylornithine aminotransferase OS=Methanosarcina... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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