CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_KLEP3 (Putrescine aminotransferase OS=Klebsiella pneumoniae (strain 342) GN=patA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.951e-15
Identity = 59/154 (38.31%), Postives = 79/154 (51.30%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+ G   A   M ++  +      T   VA  + E IQG GG+I    GYLPAV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA V T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PF-GDINAMRTMLSECKK------TGDDVAAVILEPIQGEGGVILPPQGYLPAVRKLCDEFGALLILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATVAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_CAUCR (Succinylornithine transaminase OS=Caulobacter crescentus GN=astC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.951e-15
Identity = 51/152 (33.55%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            +++  NA+HG    T+ AT Q   K     T ++ A +  P+  + GA   +             +   A  L E IQG GG+    PG+L  +     +   L I DEVQ G  RTG H +  E +GV PDI+ +AKG+G G P+GA + T
Sbjct:  121 VLTFGNAFHGRTLATISATDQM--KVREGFTPLYDAFDTTPFNDIEGAARAI-------------TPQTAAILVEPIQGEGGLTPATPGFLAGLRALCDQHDLLLILDEVQTGIGRTG-HLFAHELYGVRPDIIAVAKGLGGGFPIGACLAT 256          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_CORGL (Acetylornithine aminotransferase OS=Corynebacterium glutamicum GN=argD PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.549e-15
Identity = 59/163 (36.20%), Postives = 84/163 (51.53%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            ARL TG + I++  + +HG   G++  T Q + +  F  + +GV       PY      D +   K V+          VA    E IQG  G++    G+L AV +   + G L I DEVQ G  RTG  F+  +  GVVPD+VTMAKG+G G+P+GA + T
Sbjct:  121 ARL-TGRSRILAAVHGFHGRTMGSLALTGQPDKREAFLPMPSGVEFY----PY-----GDTDYLRKMVET-----NPTDVAAIFLEPIQGETGVVPAPEGFLKAVRELCDEYGILMITDEVQTGVGRTGD-FFAHQHDGVVPDVVTMAKGLGGGLPIGACLAT 267          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_COREF (Acetylornithine aminotransferase OS=Corynebacterium efficiens GN=argD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.549e-15
Identity = 58/163 (35.58%), Postives = 82/163 (50.31%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            ARL TG + I++  N +HG   G++  T Q + +  F  + +GV       PY       G++   D    +        A  + E IQG  G+I    G+L  V +   K G L I DEVQ G  RTG  F+  +  GV PD+VTMAKG+G G+P+GA + T
Sbjct:  128 ARL-TGRHRILAATNGFHGRTMGSLALTGQPDKRIPFAPLPSGVEFY----PY-------GDL---DYLTTLVESDPTDTAAIILEPIQGETGVIPAPEGFLTGVRELCDKHGLLFIVDEVQTGIGRTGD-FFAHQHEGVTPDVVTMAKGLGGGLPIGACLAT 274          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD2_PSESM (Acetylornithine aminotransferase 2 OS=Pseudomonas syringae pv. tomato GN=argD2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.549e-15
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG----TSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGA 472
            ++ + NA+HG   GT+ A+     + +      +  L  D  +  FG           DL+ F     T GH +A  L E IQG GG      GYL A+ +   +   L + DE+Q G  RTG  F  F+  G+VPD++T+AKG+GNG+P+GA
Sbjct:  122 VVVMENAFHGRTLGTLAASDGPAVRLS------YSDLPGDYIKVPFG-----------DLLAFDKVCVTHGHRIAAVLVEPIQGEGGAQVAPAGYLKALRERCTRRDWLLMLDEIQTGMGRTGKWF-AFQHEGIVPDVMTLAKGLGNGVPIGA 256          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_STAES (Acetylornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=argD PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.347e-15
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW--KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR  TG ++II+ + ++HG   G M AT Q     +F  V  G   A+  D     F +   +            TS + A  + E IQG  G++   P ++  + +  K+   L I DEVQ G  RTG   +  E + + PDI+T+AKG+GNG+P+GA++
Sbjct:  104 ARKATGKSEIIAFKKSFHGRTYGAMSATGQKKITDQFGPVVPGFKFAIFND-----FNSFKSL------------TSNNTAAVIIEIIQGESGVLPADPLFMKQLNEYCKQKDILIIVDEVQTGIGRTGK-LYAHEHYQLSPDIITLAKGLGNGLPIGAML 246          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_METKA (Acetylornithine aminotransferase OS=Methanopyrus kandleri GN=argD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.347e-15
Identity = 55/161 (34.16%), Postives = 81/161 (50.31%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR +TGC   I+    +HG   G + AT +  ++  F  +     H     PY       G++ A  V+  ID  T    A  + E +QG  G+     G+L  + +   + G L I DEVQ+G  RTG  F+ FE   V+PDIV +AKG+G G+P+GA +
Sbjct:  115 ARKFTGCTKFIAFEGGFHGRTMGALSATWKPEFREPFEPLVPEFEHV----PY-------GDVNA--VEKAIDDDT----AAVIVEPVQGEAGVRIPPEGFLRELRELCDEHGLLLIVDEVQSGMGRTGQ-FFAFEHEDVLPDIVCLAKGLGGGVPVGATI 257          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ENTS8 (Putrescine aminotransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=patA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.678e-15
Identity = 57/156 (36.54%), Postives = 77/156 (49.36%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHAL--NPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            ++   A+HG + G + ATA++ ++  F  +  G  H    N D  R + G   +             T   VA  + E IQG GG+I    GYLPAV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA V T
Sbjct:  174 VAASGAFHGKSLGALSATAKAAFRKPFMPLLPGFRHVPFGNIDALRELLGECKK-------------TGDDVAAVILEPIQGEGGVILPPSGYLPAVRKLCDEYGALLIFDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATVAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ECTB_WOLSU (Diaminobutyrate--2-oxoglutarate transaminase OS=Wolinella succinogenes GN=ectB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.678e-15
Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG--ADGEMYAKDVQDLIDFGTSGH--VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR+  G +++I+  NA+HG   G+M  T  + ++        + +  P  + G FG   D  +Y   ++  ++ G+SG    A  + E+IQ  GG+      +L +V K  +    L I DE+Q G  RTG  F+ FE  G+ PDI+T++K IG G+PL  V+
Sbjct:  120 ARMVKGRSNVIAFTNAFHGLTMGSMAVTGNAFYRDEAFVNRANVSFMP--FDGYFGEEVDTSLY---LRRFLEDGSSGVDLPAAIILETIQAEGGVNVARDEWLRSVEKVCRDFDILLIVDEIQVGNGRTG-RFFSFEESGIRPDIITLSKSIGGGLPLALVL 276          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ESCF3 (Putrescine aminotransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=patA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 7.416e-15
Identity = 57/154 (37.01%), Postives = 76/154 (49.35%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G + A          T   VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PF-------GHIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
PAT_KLEP31.951e-1538.31Putrescine aminotransferase OS=Klebsiella pneumoni... [more]
ASTC_CAUCR1.951e-1533.55Succinylornithine transaminase OS=Caulobacter cres... [more]
ARGD_CORGL2.549e-1536.20Acetylornithine aminotransferase OS=Corynebacteriu... [more]
ARGD_COREF2.549e-1535.58Acetylornithine aminotransferase OS=Corynebacteriu... [more]
ARGD2_PSESM2.549e-1534.64Acetylornithine aminotransferase 2 OS=Pseudomonas ... [more]
ARGD_STAES4.347e-1532.92Acetylornithine aminotransferase OS=Staphylococcus... [more]
ARGD_METKA4.347e-1534.16Acetylornithine aminotransferase OS=Methanopyrus k... [more]
PAT_ENTS85.678e-1536.54Putrescine aminotransferase OS=Enterobacter sakaza... [more]
ECTB_WOLSU5.678e-1532.52Diaminobutyrate--2-oxoglutarate transaminase OS=Wo... [more]
PAT_ESCF37.416e-1537.01Putrescine aminotransferase OS=Escherichia ferguso... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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