CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECOSE (Putrescine aminotransferase OS=Escherichia coli (strain SE11) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2 
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315
[Close]
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECOLI (Putrescine aminotransferase OS=Escherichia coli (strain K12) GN=patA PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2 
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315
[Close]
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECOLC (Putrescine aminotransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2 
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315
[Close]
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECOL6 (Putrescine aminotransferase OS=Escherichia coli O6 GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2 
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMLTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315
[Close]
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECOK1 (Putrescine aminotransferase OS=Escherichia coli O1:K1 / APEC GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2 
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315
[Close]
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECOHS (Putrescine aminotransferase OS=Escherichia coli O9:H4 (strain HS) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2 
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315
[Close]
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECODH (Putrescine aminotransferase OS=Escherichia coli (strain K12 / DH10B) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2 
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315
[Close]
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECOBW (Putrescine aminotransferase OS=Escherichia coli (strain K12 / BW2952) GN=patA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2 
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315
[Close]
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECO8A (Putrescine aminotransferase OS=Escherichia coli O8 (strain IAI1) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2 
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315
[Close]
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECO81 (Putrescine aminotransferase OS=Escherichia coli O81 (strain ED1a) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2 
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
PAT_ECOSE9.685e-1536.36Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOLI9.685e-1536.36Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOLC9.685e-1536.36Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOL69.685e-1536.36Putrescine aminotransferase OS=Escherichia coli O6... [more]
PAT_ECOK19.685e-1536.36Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECOHS9.685e-1536.36Putrescine aminotransferase OS=Escherichia coli O9... [more]
PAT_ECODH9.685e-1536.36Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOBW9.685e-1536.36Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECO8A9.685e-1536.36Putrescine aminotransferase OS=Escherichia coli O8... [more]
PAT_ECO819.685e-1536.36Putrescine aminotransferase OS=Escherichia coli O8... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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