CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECO7I (Putrescine aminotransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECO5E (Putrescine aminotransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=patA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECO57 (Putrescine aminotransferase OS=Escherichia coli O157:H7 GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECO55 (Putrescine aminotransferase OS=Escherichia coli (strain 55989 / EAEC) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECO45 (Putrescine aminotransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECO27 (Putrescine aminotransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=patA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ECO24 (Putrescine aminotransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=patA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_XANAC (Acetylornithine aminotransferase OS=Xanthomonas axonopodis pv. citri GN=argD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            I++ R ++HG    ++ ATAQ  ++              + Y  + G    +   DV  L      G VA  + E IQG GG++  APG+L  V     +   L + DE+Q G  RTG+ F  ++   V PDIVT+AK +G G P+GA++
Sbjct:  134 IVTFRGSFHGRTLASVTATAQPKYQ--------------EGYEPLPGGFRYVDFNDVAALEAAMAGGDVAAVMVEPIQGEGGVMPAAPGFLSRVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQ-VTPDIVTLAKALGGGFPIGAML 268          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_ALNGL (Acetylornithine aminotransferase, mitochondrial OS=Alnus glutinosa GN=AG118 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.265e-14
Identity = 44/153 (28.76%), Postives = 74/153 (48.37%), Query Frame = 2
Query:   26 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            + +S  N++HG   G++  T++ N++               P+  V      +   +++          +A    E IQG GG+      +L A+ K+   +G L + DEVQ G  RTG + W  E + V PDI+T+AK +  G+P+GAV+ T
Sbjct:  179 EFVSFSNSFHGRTMGSLALTSKENYR--------------SPFEPVMPGVTFLEYGNIEAATQLIQRRKIAAVFVEPIQGEGGVYSATKEFLYALRKACDDSGTLLVFDEVQCGLGRTG-YLWAHEIYDVFPDIMTLAKPLAGGLPIGAVLVT 316          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_MYCTU (Acetylornithine aminotransferase OS=Mycobacterium tuberculosis GN=argD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.652e-14
Identity = 47/153 (30.72%), Postives = 71/153 (46.41%), Query Frame = 2
Query:   14 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGA 472
            TG   +++  +A+HG   G++  T Q                   P+  + G    +   DV D +      H A    E I G  G++    GYL A      + G L + DEVQ G  RTG+ F+  +  G+ PD+VT+AKG+G G+P+GA
Sbjct:  127 TGRTKLVAAHDAFHGRTMGSLALTGQP--------------AKQTPFAPLPGDVTHVGYGDV-DALAAAVDDHTAAVFLEPIMGESGVVVPPAGYLAAARDITARRGALLVLDEVQTGMGRTGA-FFAHQHDGITPDVVTLAKGLGGGLPIGA 263          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
PAT_ECO7I9.685e-1536.36Putrescine aminotransferase OS=Escherichia coli O7... [more]
PAT_ECO5E9.685e-1536.36Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO579.685e-1536.36Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO559.685e-1536.36Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECO459.685e-1536.36Putrescine aminotransferase OS=Escherichia coli O4... [more]
PAT_ECO279.685e-1536.36Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO249.685e-1536.36Putrescine aminotransferase OS=Escherichia coli O1... [more]
ARGD_XANAC9.685e-1532.67Acetylornithine aminotransferase OS=Xanthomonas ax... [more]
ARGD_ALNGL1.265e-1428.76Acetylornithine aminotransferase, mitochondrial OS... [more]
ARGD_MYCTU1.652e-1430.72Acetylornithine aminotransferase OS=Mycobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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