CB250327

Overview
NameCB250327
Unique NameCB250327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250327 vs. ExPASy Swiss-Prot
Match: PKN1_THETN (Probable serine/threonine-protein kinase Sps1 OS=Thermoanaerobacter tengcongensis GN=sps1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 1
Query:   82 LDWKTRYQIALGTARGLAYLHEKCRDCIIHCDIKPENILLDAEFCPKVSDFGLAKLVGREFSRVLTTMRGTRGYLAPERISGVAITAKADVYSYGMMLYEFVSGR 396
            L+ K   +IA    R L + H   ++ IIH DIKP+NIL+  E   KV+DFG+A+            + GT  Y +PE+  G  +  + D+YS G++L+E ++G+
Sbjct:  106 LEVKRAVEIASQVCRALDHAH---KNKIIHRDIKPQNILVTDEDVVKVTDFGIARAANGATITYTGDVIGTAYYFSPEQAKGSIVDERTDIYSLGIVLFEMLTGK 207          
BLAST of CB250327 vs. ExPASy Swiss-Prot
Match: EPA4A_XENLA (Ephrin type-A receptor 4-A OS=Xenopus laevis GN=epha4-A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 59/209 (28.23%), Postives = 102/209 (48.80%), Query Frame = 1
Query:   10 LLVYDFMPNGSLDSHLFTEKDSDFLDWKTRYQIALGTARGLAYLHEKCRDCIIHCDIKPENILLDAEFCPKVSDFGLAKLVGREFSRVLTTMRG--TRGYLAPERISGVAITAKADVYSYGMMLYEFVS-GRRNSQESEDGKVRFFPSWAAKQIVEGSNLISLLDPRLEGNADEEELARLCNVACWCIQDDETHRPSMGQVVQILEGVL 627
            +++ ++M NGSLD+  F  K+           I  G   G+ YL +      +H D+   NIL+++    KVSDFG+++++  +     TT  G     + APE I+    T+ +DV+SYG++++E +S G R   +  +  V        K I EG  L   +D  +        L +L  + CW  Q + + RP  GQ+V +L+ ++
Sbjct:  695 MIITEYMENGSLDA--FLRKNDGRFTVIQLVGILRGIGSGMKYLSDMS---YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDV-------IKAIEEGYRLPPPMDCPI-------ALHQLM-LDCW--QKERSDRPKFGQIVSMLDKLI 881          
BLAST of CB250327 vs. ExPASy Swiss-Prot
Match: DUSTY_CHICK (Dual serine/threonine and tyrosine protein kinase OS=Gallus gallus GN=DSTYK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 1
Query:   82 LDWKTRYQIALGTARGLAYLHEKCRDCIIHCDIKPENILLDAEFCPKVSDFGLAKLVGREFSRVLTTMRGTRGYLAPERISGVAITAKADVYSYGMMLYEFVSGRRNSQESEDGKVRFFPSWAAKQIVEGSNLISLLDPRLEGNADEEELARLCNVACWCIQDDETHRPSMGQVVQILEGVLD 630
            L+ +TR QIAL    G+ YLH +    ++H DIK +N+LLD +   K++D G  K        ++    GT  ++APE  +G       DVY++G++ +   SG     E+       F   A+K  +  +    +   RL     +EE  +L   ACW    D + RP +G V  +L+G++D
Sbjct:  750 LELETRLQIALDVVEGIRYLHSQG---LVHRDIKLKNVLLDKKNRAKITDLGFCKPEAMMSGSIV----GTPIHMAPELFTG-KYDNSVDVYAFGILFWYICSGHVKLPEA-------FERCASKDHLWNNVRRGVRPERLP--VFDEECWQLME-ACW--DGDSSQRPLLGIVQPMLQGIMD 912          
BLAST of CB250327 vs. ExPASy Swiss-Prot
Match: AIR2_CAEBR (Aurora/Ipl1-related protein kinase 2 OS=Caenorhabditis briggsae GN=air-2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   13 LVYDFMPNGSLDSHLFTEKD-SDFLDWKTRYQIALGTARGLAYLHEKCRDCIIHCDIKPENILLDAEFCPKVSDFGLAKLVGREFSRVLTTMRGTRGYLAPERISGVAITAKADVYSYGMMLYEFVSGR 396
            L+ ++ P G +   L T+K  ++ +  K  Y+IA      L+Y H K    +IH DIKPEN+L+ A+   K+ DFG +       S    TM GT  YL PE ++G + +   D+++ G++ YEF+ G+
Sbjct:  102 LILEYAPGGEMYKQLTTQKRFTEAMAGKYMYEIA----DALSYCHRKN---VIHRDIKPENLLIGAQGELKIGDFGWSV---HAPSNKRQTMCGTMDYLPPEMVNGNSHSDAVDLWAIGVLCYEFLVGK 220          
The following BLAST results are available for this feature:
BLAST of CB250327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
PKN1_THETN9.911e-1135.24Probable serine/threonine-protein kinase Sps1 OS=T... [more]
EPA4A_XENLA9.911e-1128.23Ephrin type-A receptor 4-A OS=Xenopus laevis GN=ep... [more]
DUSTY_CHICK9.911e-1130.05Dual serine/threonine and tyrosine protein kinase ... [more]
AIR2_CAEBR9.911e-1134.11Aurora/Ipl1-related protein kinase 2 OS=Caenorhabd... [more]

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Properties
Property NameValue
Genbank descriptionEST0115 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ167 similar to putative receptor-like kinase (acc# NP_179503), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250327 ID=CB250327; Name=CB250327; organism=Citrus sinensis; type=EST; length=772bp
ACTAGTAGGTTGTTGGTCTACGATTTCATGCCAAACGGTTCTTTAGACTC
TCATCTCTTCACTGAAAAAGATTCAGACTTTCTTGATTGGAAGACAAGAT
ACCAAATTGCACTGGGGACAGCCAGAGGTTTGGCTTATCTTCATGAGAAG
TGCAGAGACTGCATCATACACTGTGACATAAAGCCAGAGAACATTCTGTT
AGACGCTGAATTTTGTCCCAAAGTGTCGGATTTTGGGCTGGCAAAGCTTG
TTGGGAGGGAGTTCAGCCGTGTCCTAACAACCATGAGAGGAACAAGAGGT
TACCTTGCACCTGAACGGATTTCAGGAGTGGCCATAACAGCCAAAGCGGA
TGTCTACAGCTATGGAATGATGCTGTATGAATTTGTATCAGGAAGGAGGA
ACTCCCAGGAATCTGAAGATGGTAAAGTGAGGTTCTTCCCATCTTGGGCT
GCTAAACAAATAGTTGAAGGCAGCAATCTCATTAGCCTATTAGACCCAAG
ACTGGAGGGCAACGCTGACGAAGAAGAGCTTGCAAGACTTTGCAATGTGG
CTTGTTGGTGCATCCAAGATGATGAGACTCACAGGCCATCAATGGGTCAA
GTAGTTCAAATTCTTGAGGGAGTTTTGGACGTGACACTGCCTCCAATTCC
CAGAGCTCTCCAAGTAATGGTCGATGACCATGAGCACGTAGTCTTCTTCA
CTGAATCATCCACATCTCAGAGTTCCCTGTCAAAGAGCAACAATTCAACT
GCTTCATCTCAAGCAAAGAGTA
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