CB250328

Overview
NameCB250328
Unique NameCB250328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: CTR1_ARATH (Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 54/163 (33.13%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  124 DEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKL-EHKTLPLPKLIAIALDIARGMEYIHSQG--VIHRDLKPENVLIDQEFHLKIADFGIA 603
            D+  +    L +  +   G+   ++   +    VAVKI+   D        A    +F REVA++ RL +PN++ F+ A  +PP   ++TEYLS GSL   LHK    + L   + +++A D+A+GM Y+H++   ++HRDLK  N+L+D+++ +K+ DFG++
Sbjct:  542 DDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQD------FHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLS 698          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: PYK3_DICDI (Dual specificity protein kinase pyk3 OS=Dictyostelium discoideum GN=pyk3 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 55/142 (38.73%), Postives = 92/142 (64.79%), Query Frame = 1
Query:  178 GAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIA 603
            G+ + ++ GI+    VA+KI++      NE+++   +++F +EV+ L + H+PNV+ F+ AC  PP  C+ TEYL  GSL   LH  + K  PL  +  +  D++ GME++HS  ++HRDL  +N+L+D+  ++KIADFG+A
Sbjct: 1066 GSFANVFLGIWNGYKVAIKILK------NESISN--DEKFIKEVSSLIKSHHPNVVTFMGACIDPP--CIFTEYLQGGSLYDVLHIQKIKLNPL-MMYKMIHDLSLGMEHLHSIQMLHRDLTSKNILLDEFKNIKIADFGLA 1196          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: YR818_MIMIV (Putative serine/threonine-protein kinase/receptor R818 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R818 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 52/159 (32.70%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  124 DEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGI 600
            DE  VD  +L        G    ++  ++K   VAVK +       N  +    E+ F +E+  ++ L +PNV+ F+AA  +PP  C++ E++S GSL   L       +P    I IA   A+GM ++HS  ++HRDLK  N+L+D ++++K++DFG+
Sbjct:  784 DEWEVDFHELDFMESLGSGGSGEVFKAMWKGTEVAVKKL------VNSNITKDAERNFKQEIHRMTSLRHPNVVLFMAASTRPPNMCIVMEFMSLGSLYDLLGNELVTEIPPVLRIRIAYQAAKGMHFLHSSDIVHRDLKSLNLLLDSKWNVKVSDFGL 936          

HSP 2 Score: 91.2781 bits (225), Expect = 4.223e-18
Identity = 55/159 (34.59%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  136 VDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKL-IAIALDIARGMEYIHSQG--VIHRDLKPENVLIDQEFHLKIADFGIA 603
            ++   + +G +   G++  +  G +K+  VAVK       DE + L      +F  E+A LS+L +P++I  + AC K P  C++TE++  GSLR  +      T P  KL I +    A G+ Y+H+    +IHRD+KP N+L+D   ++KIADFG A
Sbjct: 1389 INYDDIQIGKQIGVGSYGIVNMGKWKNINVAVKKFVKQKIDEKQML------EFRAEIAFLSQLRHPHIILMIGACLKRPNICIVTEFMGNGSLRNVI----KTTKPEWKLKIKMLYQTALGIGYLHNSDPIIIHRDIKPSNILVDDSMNVKIADFGFA 1537          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: TNI3K_RAT (Serine/threonine-protein kinase TNNI3K OS=Rattus norvegicus GN=Tnni3k PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 56/157 (35.67%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  136 VDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAAC-KKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHS--QGVIHRDLKPENVLIDQEFHLKIADFG 597
            + LS++        G+  ++Y G  +++ VA+K  R      N   +      F REV++L +L++P V++FV AC   P  + ++T+Y+S GSL + LH+ + + L L   + IA+D+A+GMEY+HS  Q +IHRDL   N+L+ ++ H  +ADFG
Sbjct:  458 LQLSEIEFHEIIGSGSFGKVYKGRCRNKIVAIKRYRA-----NTYCSKSDVDMFCREVSILCQLNHPCVVQFVGACLDDPSQFAIVTQYISGGSLFSLLHE-QKRILDLQSKLIIAVDVAKGMEYLHSLTQPIIHRDLNSHNILLYEDGHAVVADFG 608          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: TNI3K_MOUSE (Serine/threonine-protein kinase TNNI3K OS=Mus musculus GN=Tnni3k PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 56/157 (35.67%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  136 VDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAAC-KKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHS--QGVIHRDLKPENVLIDQEFHLKIADFG 597
            + LS++        G+  ++Y G  +++ VA+K  R      N   +      F REV++L +L++P V++FV AC   P  + ++T+Y+S GSL + LH+ + + L L   + IA+D+A+GMEY+HS  Q +IHRDL   N+L+ ++ H  +ADFG
Sbjct:  457 LQLSEIEFHEIIGSGSFGKVYKGRCRNKIVAIKRYRA-----NTYCSKSDVDMFCREVSILCQLNHPCVVQFVGACLDDPSQFAIVTQYISGGSLFSLLHE-QKRILDLQSKLIIAVDVAKGMEYLHSLTQPIIHRDLNSHNILLYEDGHAVVADFG 607          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: SHKB_DICDI (Dual specificity protein kinase shkB OS=Dictyostelium discoideum GN=shkB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 48/148 (32.43%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  166 RFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKT--LPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIA 603
            +   GA   +Y GI + + VA+K +     +EN         +F +EV+L+++L NP+++ F+ AC  P    ++TE + +GS+ + L   E  +  +   + I IA D   GM ++H+  ++H DLKP N+L+DQ + +K+ADFG++
Sbjct:  179 KLGSGAFGSVYKGIVRGKEVAIKKLTQTVFEENTM------NEFKKEVSLMAKLRNPHLLLFMGACTAPEDLSIVTELMPKGSVHSLLRAKEDTSDFITFKRAILIARDTVLGMTWLHASNILHLDLKPANLLVDQNWVVKVADFGLS 320          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: TNI3K_HUMAN (Serine/threonine-protein kinase TNNI3K OS=Homo sapiens GN=TNNI3K PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 56/157 (35.67%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  136 VDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAAC-KKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIH--SQGVIHRDLKPENVLIDQEFHLKIADFG 597
            + LS++        G+  ++Y G  +++ VA+K  R      N   +      F REV++L +L++P VI+FV AC   P  + ++T+Y+S GSL + LH+ + + L L   + IA+D+A+GMEY+H  +Q +IHRDL   N+L+ ++ H  +ADFG
Sbjct:  559 LQLSEIEFHEIIGSGSFGKVYKGRCRNKIVAIKRYRA-----NTYCSKSDVDMFCREVSILCQLNHPCVIQFVGACLNDPSQFAIVTQYISGGSLFSLLHE-QKRILDLQSKLIIAVDVAKGMEYLHNLTQPIIHRDLNSHNILLYEDGHAVVADFG 709          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: GDT2_DICDI (Probable serine/threonine-protein kinase gdt2 OS=Dictyostelium discoideum GN=gdt2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 51/163 (31.29%), Postives = 91/163 (55.83%), Query Frame = 1
Query:  136 VDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLI-----DQEFHLKIADFGIACE 609
            +D +++ +    + G    +Y GI++  PVAVK+++    D +E           +E++LL RL +PN++ +V       ++ ++T+Y S+G L  Y+H+ ++K   + K I I +DI++   Y+H  G+ HRDLKPEN+LI           K++DFG + E
Sbjct: 1285 IDFNEIIIKNYISEGTFGIVYRGIWRSSPVAVKLLKNEYVDHDE---------IEKEISLLERLRHPNILLYVGRFIFSGIHGIVTDYCSKGCLSKYIHENKYKITIIQK-IRILIDISKACAYLHRNGITHRDLKPENILITSLNPKSLVCAKVSDFGTSKE 1437          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: Y9963_DICDI (Probable serine/threonine-protein kinase DDB_G0272254 OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  136 VDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKL-----IAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIACE 609
            ++ S + +      G  S++  G +K + VAVK +    D   E +     ++F  EV LL  L +PN++        P   C++ E+L  G+L   +H    +     KL     +AIA DIARGM+++H++ +IHRDLK  N+L+D+ F++KIAD GIA E
Sbjct: 1068 INYSDIKIDKEIGKGHFSKVLKGNWKGKDVAVKKLNSNKDKAREEMI----QEFKAEVELLGSLQHPNLVTCYGYSLNP--MCIVMEFLPSGNLFELIHSKPSEQQQSIKLDSTLILAIAFDIARGMQHLHTRNIIHRDLKSSNLLMDKHFNIKIADLGIARE 1224          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: Y9871_DICDI (Probable serine/threonine-protein kinase DDB_G0271682 OS=Dictyostelium discoideum GN=DDB_G0271682 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 54/155 (34.84%), Postives = 86/155 (55.48%), Query Frame = 1
Query:  145 SQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIH--SQGVIHRDLKPENVLIDQEFHLKIADFGIA 603
            ++L    +   GA   +    +K  PVAVK I          L    +++F +EV++L  L +PNV+ F+  C       +ITEYL+ GSLR  L  +    L L   + + +D+A+GM Y+H  S  +IHRDLK  N+L+D  F++K++DFG++
Sbjct:  358 NELLFIKKIGSGACGEVCQYEWKGTPVAVKTIF------KSLLRKDKKEEFEKEVSILKCLRHPNVVLFMGTCLLNGNLAIITEYLNRGSLRDVLTTMNKSELSLSVKVKMLIDVAQGMNYLHTYSPPIIHRDLKSLNLLVDNNFNVKVSDFGLS 506          
The following BLAST results are available for this feature:
BLAST of CB250328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CTR1_ARATH6.960e-2133.13Serine/threonine-protein kinase CTR1 OS=Arabidopsi... [more]
PYK3_DICDI2.645e-2038.73Dual specificity protein kinase pyk3 OS=Dictyostel... [more]
YR818_MIMIV3.454e-2032.70Putative serine/threonine-protein kinase/receptor ... [more]
TNI3K_RAT2.239e-1935.67Serine/threonine-protein kinase TNNI3K OS=Rattus n... [more]
TNI3K_MOUSE2.239e-1935.67Serine/threonine-protein kinase TNNI3K OS=Mus musc... [more]
SHKB_DICDI2.239e-1932.43Dual specificity protein kinase shkB OS=Dictyostel... [more]
TNI3K_HUMAN2.924e-1935.67Serine/threonine-protein kinase TNNI3K OS=Homo sap... [more]
GDT2_DICDI2.924e-1931.29Probable serine/threonine-protein kinase gdt2 OS=D... [more]
Y9963_DICDI3.819e-1934.36Probable serine/threonine-protein kinase DDB_G0272... [more]
Y9871_DICDI3.819e-1934.84Probable serine/threonine-protein kinase DDB_G0271... [more]

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Properties
Property NameValue
Genbank descriptionEST0116 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ168 similar to protein kinase (acc# CAC09580), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250328 ID=CB250328; Name=CB250328; organism=Citrus sinensis; type=EST; length=609bp
ACAAGCCCTCTCAGGCACTTGGGTTCTTTGAGAGTTACCGAGAGATATAA
GAGCAGAAAGGAATCAGCTTGGACCAAGTATTTTGATCATGGCGGAGTTA
GGGTTAATGCTGTGGATGCTGCAGATGAACACACTGTTGACCTCTCTCAG
CTCTTTCTTGGGCTTAGGTTTGCTCACGGGGCACATAGCCGACTTTACCA
TGGGATATATAAGGACGAGCCTGTTGCGGTGAAGATTATCAGGATACCAG
ATGATGACGAAAATGAAACCTTGGCAGCTCGATTAGAGAAACAATTCAAT
CGAGAAGTAGCTCTTTTATCTCGCCTCCACAATCCAAATGTCATAAAGTT
TGTAGCAGCATGTAAAAAGCCACCAGTATATTGTGTCATCACAGAATATC
TATCAGAGGGTTCCTTGAGGGCATACTTGCATAAGCTGGAGCACAAAACC
CTCCCCTTACCGAAACTGATTGCAATTGCTCTCGATATTGCACGTGGAAT
GGAATACATTCACTCTCAAGGTGTCATTCATCGGGATCTTAAGCCAGAAA
ATGTCCTTATTGATCAAGAATTCCACCTGAAAATTGCTGATTTTGGCATA
GCCTGTGAG
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