CB250328

Overview
NameCB250328
Unique NameCB250328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: MEE39_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MEE39 OS=Arabidopsis thaliana GN=MEE39 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.317e-16
Identity = 52/147 (35.37%), Postives = 82/147 (55.78%), Query Frame = 1
Query:  178 GAHSRLYHG-IYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLH-KLEHKTLPLPKLIAIALDIARGMEYIHS---QGVIHRDLKPENVLIDQEFHLKIADFGIA 603
            G    +YHG +   E VAVK++           +A+  K+F  EV LL R+H+ N++  V  C +   + +I EY+S G L  +L  K     L     + IA++ A G+EY+H+     ++HRD+K  N+L+D+EF  KIADFG++
Sbjct:  575 GGFGVVYHGDLNGSEQVAVKLL--------SQTSAQGYKEFKAEVELLLRVHHINLVNLVGYCDEQDHFALIYEYMSNGDLHQHLSGKHGGSVLNWGTRLQIAIEAALGLEYLHTGCKPAMVHRDVKSTNILLDEEFKAKIADFGLS 713          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: FYN_CHICK (Proto-oncogene tyrosine-protein kinase Fyn OS=Gallus gallus GN=FYN PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.317e-16
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  118 AADEHTVDLSQLFLGLRFAHGAHSRLYHGIYK-DEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIA 603
            A D   V    LFL  +   G  + ++ G +  +  VA+K ++ P     E+        F  E  ++ +L +  +++  A   + P+Y ++TEY+S+GSL  +L   E + L LP L+ +A  +A GM YI     IHRDL+  N+L+      KIADFG+A
Sbjct:  257 AKDAWEVARDSLFLEQKLGQGCFAEVWRGTWNGNTKVAIKTLK-PGTMSPES--------FLEEAQIMKKLKHDKLVQLYAVVSRRPIY-IVTEYMSKGSLLIFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGNGLICKIADFGLA 409          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: SHKC_DICDI (Dual specificity protein kinase shkC OS=Dictyostelium discoideum GN=shkC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.026e-16
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  178 GAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQG--VIHRDLKPENVLIDQEFHLKIADFGIA 603
            G+  ++Y G  + + VAVK++   + D   TL+A     F +EV L+S++++PN+  F+ AC  P    ++TE + +G+L   LH  +   LPL   + +A D A G+ ++H      +HRD+K  N+L+D+   +KI DFG++
Sbjct:   33 GSFGKVYKGRCRQKAVAVKLLHKQNFDA-ATLSA-----FRKEVHLMSKIYHPNICLFMGACTIPGRCVIVTELVPKGNLETLLHD-QKIQLPLYLRMRMARDAALGINWLHESNPVFVHRDIKSSNLLVDENMRVKICDFGLS 169          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: RIPK2_BOVIN (Receptor-interacting serine/threonine-protein kinase 2 OS=Bos taurus GN=RIPK2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.026e-16
Identity = 52/153 (33.99%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  166 RFAHGAHSRLYHGIYKDEPVAVKIIRIP----DDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLH-KLEHKTLPLPKLIAIALDIARGMEYIHSQG--VIHRDLKPENVLIDQEFHLKIADFGIA 603
            R A G  S   H  ++ + VAVK + I     D + N+ L         RE  +L +     ++  +  C +P    ++TEY+  GSL   LH K+E+  +P P    I  +IA G+ Y+H+    ++H DLK +N+L+D EFH+KIADFG++
Sbjct:   26 RGASGTVSSARHADWRVQ-VAVKHLHIHSPLLDSERNDVL---------REAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKIEYPDVPWPLRFRILHEIALGVNYLHNMNPPLLHHDLKTQNILLDNEFHVKIADFGLS 168          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: LIMK1_DROME (LIM domain kinase 1 OS=Drosophila melanogaster GN=LIMK1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.026e-16
Identity = 50/188 (26.60%), Postives = 97/188 (51.60%), Query Frame = 1
Query:   40 ERYKSRKESAWTKYFDHGGVRVNAVDAADEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIA 603
            E++++++ SA  + +D    +   V    +     + L +G +   G   +++   ++     + +  +   DE        ++ F +EVA+L  L + +V+KF+    K     ++TEY++ G L+  +H    + LP P+ + +A DIA GM Y+HS  +IHRDL   N L+ ++  + +ADFG+A
Sbjct:  364 EQHQAQQHSAHPQLYDLSRTQSCRVVQKPQRIFRATDLVIGEKLGEGFFGKVFKVTHRQSGEVMVLKELHRADEEA------QRNFIKEVAVLRLLDHRHVLKFIGVLYKDKKLHMVTEYVAGGCLKELIHD-PAQVLPWPQRVRLARDIACGMSYLHSMNIIHRDLNSMNCLVREDRSVIVADFGLA 544          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: YES_CANFA (Proto-oncogene tyrosine-protein kinase Yes OS=Canis familiaris GN=YES1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.952e-16
Identity = 49/163 (30.06%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  118 AADEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEP-VAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIA 603
            A D   +    L L ++   G    ++ G +     VA+K ++         L   + + F +E  ++ +L +  ++   A   + P+Y ++TE++S+GSL  +L + + K L LP+L+ +A  IA GM YI     IHRDL+  N+L+ +    KIADFG+A
Sbjct:  262 AKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTKVAIKTLK---------LGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIY-IVTEFMSKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGENLVCKIADFGLA 414          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: KRAF1_DROME (Raf homolog serine/threonine-protein kinase phl OS=Drosophila melanogaster GN=phl PE=1 SV=5)

HSP 1 Score: 84.7297 bits (208), Expect = 3.952e-16
Identity = 48/166 (28.92%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  106 NAVDAADEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIA 603
            +A  + +   +   ++ +G R   G+   +Y   +   PVAVK + +      +  A      F  EVA+L +  + N++ F+    KP +  ++T++    SL  ++H  E K   L  LI I   +A+GM+Y+H++ +IHRDLK  N+ + ++  +KI DFG+A
Sbjct:  457 DAKSSEENWNILAEEILIGPRIGSGSFGTVYRAHWHG-PVAVKTLNVKTPSPAQLQA------FKNEVAMLKKTRHCNILLFMGCVSKPSL-AIVTQWCEGSSLYKHVHVSETK-FKLNTLIDIGRQVAQGMDYLHAKNIIHRDLKSNNIFLHEDLSVKIGDFGLA 613          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: DDR1_RAT (Epithelial discoidin domain-containing receptor 1 OS=Rattus norvegicus GN=Ddr1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.952e-16
Identity = 50/144 (34.72%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  223 VAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYL--HKLEHK---------------TLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIA 603
            VAVKI+R PD  +N          F +EV ++SRL + N+I+ +  C +    C+IT+Y+  G L  +L  H+LE+K               T+  P L+ +   IA GM Y+ +   +HRDL   N L+ + F +KIADFG++
Sbjct:  649 VAVKILR-PDATKNA------RNDFLKEVKIMSRLKDLNIIRLLGVCVQDDPLCMITDYMENGDLNQFLSAHQLENKVTQGLPGDRESDQGPTISYPMLLHVGAQIASGMRYLATLNFVHRDLATRNCLVGENFTIKIADFGMS 785          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: ABL_MLVAB (Tyrosine-protein kinase transforming protein Abl OS=Abelson murine leukemia virus GN=ABL PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.952e-16
Identity = 39/160 (24.38%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  124 DEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIA 603
            D+  ++ + + +  +   G +  +Y G++K   + V +  + +D           ++F +E A++  + +PN+++ +  C + P + +ITE+++ G+L  YL +   + +    L+ +A  I+  MEY+  +  IHRDL   N L+ +   +K+ADFG++
Sbjct:  119 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-------EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 271          
BLAST of CB250328 vs. ExPASy Swiss-Prot
Match: ABL1_MOUSE (Proto-oncogene tyrosine-protein kinase ABL1 OS=Mus musculus GN=Abl1 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.952e-16
Identity = 39/160 (24.38%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  124 DEHTVDLSQLFLGLRFAHGAHSRLYHGIYKDEPVAVKIIRIPDDDENETLAARLEKQFNREVALLSRLHNPNVIKFVAACKKPPVYCVITEYLSEGSLRAYLHKLEHKTLPLPKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIA 603
            D+  ++ + + +  +   G +  +Y G++K   + V +  + +D           ++F +E A++  + +PN+++ +  C + P + +ITE+++ G+L  YL +   + +    L+ +A  I+  MEY+  +  IHRDL   N L+ +   +K+ADFG++
Sbjct:  233 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-------EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 385          
The following BLAST results are available for this feature:
BLAST of CB250328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MEE39_ARATH2.317e-1635.37Probable LRR receptor-like serine/threonine-protei... [more]
FYN_CHICK2.317e-1631.90Proto-oncogene tyrosine-protein kinase Fyn OS=Gall... [more]
SHKC_DICDI3.026e-1633.33Dual specificity protein kinase shkC OS=Dictyostel... [more]
RIPK2_BOVIN3.026e-1633.99Receptor-interacting serine/threonine-protein kina... [more]
LIMK1_DROME3.026e-1626.60LIM domain kinase 1 OS=Drosophila melanogaster GN=... [more]
YES_CANFA3.952e-1630.06Proto-oncogene tyrosine-protein kinase Yes OS=Cani... [more]
KRAF1_DROME3.952e-1628.92Raf homolog serine/threonine-protein kinase phl OS... [more]
DDR1_RAT3.952e-1634.72Epithelial discoidin domain-containing receptor 1 ... [more]
ABL_MLVAB3.952e-1624.38Tyrosine-protein kinase transforming protein Abl O... [more]
ABL1_MOUSE3.952e-1624.38Proto-oncogene tyrosine-protein kinase ABL1 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionEST0116 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ168 similar to protein kinase (acc# CAC09580), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250328 ID=CB250328; Name=CB250328; organism=Citrus sinensis; type=EST; length=609bp
ACAAGCCCTCTCAGGCACTTGGGTTCTTTGAGAGTTACCGAGAGATATAA
GAGCAGAAAGGAATCAGCTTGGACCAAGTATTTTGATCATGGCGGAGTTA
GGGTTAATGCTGTGGATGCTGCAGATGAACACACTGTTGACCTCTCTCAG
CTCTTTCTTGGGCTTAGGTTTGCTCACGGGGCACATAGCCGACTTTACCA
TGGGATATATAAGGACGAGCCTGTTGCGGTGAAGATTATCAGGATACCAG
ATGATGACGAAAATGAAACCTTGGCAGCTCGATTAGAGAAACAATTCAAT
CGAGAAGTAGCTCTTTTATCTCGCCTCCACAATCCAAATGTCATAAAGTT
TGTAGCAGCATGTAAAAAGCCACCAGTATATTGTGTCATCACAGAATATC
TATCAGAGGGTTCCTTGAGGGCATACTTGCATAAGCTGGAGCACAAAACC
CTCCCCTTACCGAAACTGATTGCAATTGCTCTCGATATTGCACGTGGAAT
GGAATACATTCACTCTCAAGGTGTCATTCATCGGGATCTTAAGCCAGAAA
ATGTCCTTATTGATCAAGAATTCCACCTGAAAATTGCTGATTTTGGCATA
GCCTGTGAG
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