CB250364

Overview
NameCB250364
Unique NameCB250364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.951e-15
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = -1
Query:  254 FTASLPADECRYAVYNFDFVTDEN-CQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLD 484
            F   LP ++C YAVY+F++    N  ++SKI+F  WSPDT+ VRSKM+YASSKD  +R L+G+  ++Q TD +E+  +
Sbjct:   53 FLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.329e-15
Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = -1
Query:  248 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVM 484
            F   LP  +CRYA+Y+F+F   E   ++KIIFI+WSPD + ++SKM+Y+SSKD  +R   GI  ++QATD +E+  + +
Sbjct:   53 FLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETV 130          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.347e-15
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = -1
Query:  248 FTASLPADECRYAVYNFDF-VTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVM 484
            F A LP  +CR+AVY+F+F +      ++K+ FI WSPD + V++KMI+ASSK+  +R LDGI  E+QATD +E+  D +
Sbjct:   52 FVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDAL 131          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.265e-14
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = -1
Query:  263 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 484
            FT  LP +ECRY V ++ +  +E  QKSKI F+AW PDT+ ++ KM+  SSKD  ++   GIQVE+Q TD +E+
Sbjct:   53 FTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = -1
Query:  263 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 484
            F   LP  +CRYA+Y+  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   71 FVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = -1
Query:  263 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 484
            F   LP  +CRYA+Y+  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   71 FVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = -1
Query:  263 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 484
            F   LP  +CRYA+Y+  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   71 FVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = -1
Query:  263 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 484
            F   LP  +CRYA+Y+  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   71 FVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = -1
Query:  263 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 484
            F   LP  +CRYA+Y+  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   71 FVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = -1
Query:  263 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 484
            F   LP  +CRYA+Y+  F T E+ +K +++F  W+P+ + ++SKMIYASSKD  K++  GI+ E QA  P ++
Sbjct:   71 FVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
The following BLAST results are available for this feature:
BLAST of CB250364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
COFI_KLULA1.951e-1547.44Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_SCHPO3.329e-1545.57Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COFI_CRYNE4.347e-1547.50Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
COF1_DICDI1.265e-1448.65Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
DEST_PIG2.638e-1243.24Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN2.638e-1243.24Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_BOVIN2.638e-1243.24Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
DEST_RAT3.445e-1243.24Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3[more]
DEST_MOUSE3.445e-1243.24Destrin OS=Mus musculus GN=Dstn PE=1 SV=3[more]
DEST_CHICK3.445e-1243.24Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionEST0158 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ230 similar to actin depolymerizing factor 2 (acc# T47540), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250364 ID=CB250364; Name=CB250364; organism=Citrus sinensis; type=EST; length=484bp
ACCCCCCACAAACCATTATATATTAGTCTGTAATTATCATCACACCATAT
GGGGATACTCACCCTATTAATCCACAGATATAACAAATGAGAAGACAACT
TAAAAAAGTATTTAACTCCGACCACAAGCTGATAGCAAAGCAAGTTATAA
GTCATAAAAGATATAGACATTACATTTAAGTGAACAATATAGTATGGGCT
TTCCATTGCACCATAGGCAAGTCTAAAATTTAATTTGTGCGGCTTCTCAT
GACATCAAGACCCATCTCAGTAGGATCAGTAGCCTGCAACTCTACCTGAA
TTCCATCCAATTCTCTCTTGAACCTGTCCTTGGAGCTAGCATAAATCATC
TTGCTTCTCACCTTTGAGGTGTCGGGGGACCATGCAATGAAAATAATCTT
GCTCTTCTGGCAGTTCTCATCAGTCACAAAGTCAAAATTGTAGACAGCGT
ATCGGCACTCATCCGCTGGGAGGCTAGCAGTGAA
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