CB290197
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_BUCAP (Ribosomal RNA large subunit methyltransferase E OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rlmE PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11 Identity = 38/155 (24.52%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIK 498 VLDL ++PGGW Q A +++ +L D++P+ I+G + D + + ++ +L++ D +PN+ G + + + ++ L+ G + K F+ + ++ +K LF K+++ KP SRS S EI++L + Sbjct: 55 VLDLGSSPGGWSQYAAKKIGKKGYILACDILPMKKIKGVDFFQGDFCN---KKTLNLILTNLSNVNLNLIMSDMAPNITGCSSIDMPRIIEICKTVFTISDHVLSRNGVVLVKSFQGEGFNEFFAQMKNLFSKIKICKPKTSRSRSREIFMLATR 206
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_RHILO (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium loti GN=rlmE PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11 Identity = 51/166 (30.72%), Postives = 77/166 (46.39%), Query Frame = 1 Query: 16 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSL---VLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYK 504 L+ V+DL AAPGGW QVA R + V+G+D + + + GA L D P+ ++ + + + D+VL D + G + + L + A L P G F+ K F+ + +L LK+ F V KP ASR S E+YLL +K Sbjct: 69 LKPGMKVIDLGAAPGGWCQVAAARTKSTAENPHVVGIDYLEMDAVPGAPVLLMDFLDPDAPQKLAEALGGNP----DVVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPGGHFLAKTFQGGAENELLSMLKKNFRSVHHVKPPASRDESVELYLLAKDFK 230
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_RHISN (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium sp. (strain NGR234) GN=rlmE PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11 Identity = 51/172 (29.65%), Postives = 78/172 (45.35%), Query Frame = 1 Query: 16 LRSSHAVLDLCAAPGGWMQVAVQ---RVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKID 522 L + ++DL AAPG W Q+A + V +D + + PI G L+ D PE ++K+ + DLVL D + G + + L + A LA G F+ K F+ +L LKQ F +V KPA+SR+ S E++LL +K K + Sbjct: 67 LAGARRIIDLGAAPGSWSQIAAKVTNSTDADPRVAAIDFLEMDPIPGVRFLQLDFLDPEAPEKLKEAIGGTP----DLVLSDMAAPTTGHRQTDHLRTMHLCEVAAHFAVDVLAKGGHFLAKTFQGGTERDLLNMLKQNFSQVIHVKPASSRTESVEMFLLAKGFKGRRKAE 234
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_RHIME (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium meliloti GN=rlmE PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11 Identity = 50/166 (30.12%), Postives = 77/166 (46.39%), Query Frame = 1 Query: 16 LRSSHAVLDLCAAPGGWMQVAVQ---RVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYK 504 L + ++DL AAPG W Q+A + V +D + + PI G L+ D PE +K+ + A D+VL D + G + + L + A + LA G F+ K F+ +L LKQ F +V KPA+SR+ S E++LL +K Sbjct: 67 LAGAKRIIDLGAAPGSWSQIAAKVTNSTDADPRVAAIDFLEMDPIPGVRFLQMDFLDPEAPENLKQAIGG----APDIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGHFLAKTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAKGFK 228 The following BLAST results are available for this feature:
BLAST of CB290197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 404
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290197 ID=CB290197; Name=CB290197; organism=Citrus sinensis; type=EST; length=797bpback to top |