CB290197

Overview
NameCB290197
Unique NameCB290197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_BUCAP (Ribosomal RNA large subunit methyltransferase E OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rlmE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 38/155 (24.52%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIK 498
            VLDL ++PGGW Q A +++     +L  D++P+  I+G    + D      +  +  ++        +L++ D +PN+ G  + +      +      ++   L+  G  + K F+ + ++     +K LF K+++ KP  SRS S EI++L  +
Sbjct:   55 VLDLGSSPGGWSQYAAKKIGKKGYILACDILPMKKIKGVDFFQGDFCN---KKTLNLILTNLSNVNLNLIMSDMAPNITGCSSIDMPRIIEICKTVFTISDHVLSRNGVVLVKSFQGEGFNEFFAQMKNLFSKIKICKPKTSRSRSREIFMLATR 206          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_RHILO (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium loti GN=rlmE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 51/166 (30.72%), Postives = 77/166 (46.39%), Query Frame = 1
Query:   16 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSL---VLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYK 504
            L+    V+DL AAPGGW QVA  R    +    V+G+D + +  + GA  L  D   P+   ++ + +  +     D+VL D +    G    + +    L   +   A   L P G F+ K F+    + +L  LK+ F  V   KP ASR  S E+YLL   +K
Sbjct:   69 LKPGMKVIDLGAAPGGWCQVAAARTKSTAENPHVVGIDYLEMDAVPGAPVLLMDFLDPDAPQKLAEALGGNP----DVVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPGGHFLAKTFQGGAENELLSMLKKNFRSVHHVKPPASRDESVELYLLAKDFK 230          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_RHISN (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium sp. (strain NGR234) GN=rlmE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 51/172 (29.65%), Postives = 78/172 (45.35%), Query Frame = 1
Query:   16 LRSSHAVLDLCAAPGGWMQVAVQ---RVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYKAPAKID 522
            L  +  ++DL AAPG W Q+A +          V  +D + + PI G   L+ D   PE   ++K+ +        DLVL D +    G    + +    L   +   A   LA  G F+ K F+      +L  LKQ F +V   KPA+SR+ S E++LL   +K   K +
Sbjct:   67 LAGARRIIDLGAAPGSWSQIAAKVTNSTDADPRVAAIDFLEMDPIPGVRFLQLDFLDPEAPEKLKEAIGGTP----DLVLSDMAAPTTGHRQTDHLRTMHLCEVAAHFAVDVLAKGGHFLAKTFQGGTERDLLNMLKQNFSQVIHVKPASSRTESVEMFLLAKGFKGRRKAE 234          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_RHIME (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium meliloti GN=rlmE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 50/166 (30.12%), Postives = 77/166 (46.39%), Query Frame = 1
Query:   16 LRSSHAVLDLCAAPGGWMQVAVQ---RVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYK 504
            L  +  ++DL AAPG W Q+A +          V  +D + + PI G   L+ D   PE    +K+ +      A D+VL D +    G    + +    L   +   A + LA  G F+ K F+      +L  LKQ F +V   KPA+SR+ S E++LL   +K
Sbjct:   67 LAGAKRIIDLGAAPGSWSQIAAKVTNSTDADPRVAAIDFLEMDPIPGVRFLQMDFLDPEAPENLKQAIGG----APDIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGHFLAKTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAKGFK 228          
The following BLAST results are available for this feature:
BLAST of CB290197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 404
Match NameE-valueIdentityDescription
RLME_BUCAP4.700e-1124.52Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RHILO6.138e-1130.72Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RHISN8.016e-1129.65Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RHIME8.016e-1130.12Ribosomal RNA large subunit methyltransferase E OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290197 ID=CB290197; Name=CB290197; organism=Citrus sinensis; type=EST; length=797bp
GTCCTTAGCTCCTTCTTACGCTCATCGCACGCCGTGCTCGACCTCTGCGC
CGCTCCAGGTGGGTGGATGCAGGTGGCAGTGCAGCGGGTCCCGGTAGGGA
GCCTCGTTCTGGGTCTTGACTTGGTCCCGATCGCCCCCATTCGAGGAGCC
GTATCGCTTGAGCAAGATATAACGAAGCCCGAGTGTAGGGCTAGAGTGAA
GAAGGTGATGGAGGAGCATGGGGTTAGGGCTTTTGACTTGGTTTTGCATG
ATGGGTCGCCTAATGTTGGTGGTGCTTGGGCTCAGGAGGCCATGAGTCAG
AACGCTTTGGTCATTGATTCTGTAAAGCTGGCTACGCAGTTCTTGGCTCC
TAAAGGAACCTTTGTTACTAAAGTTTTCAGGTCACAGGATTATAGTTCTG
TCCTCTACTGTCTCAAGCAGTTATTTGAAAAGGTTGAGGTGGATAAACCT
GCTGCTAGTCGTTCCGCATCTGCTGAGATATATCTTTTGGGTATAAAATA
CAAGGCTCCTGCAAAGATCGATCCACGTCTTCTTGATGTGAAGTATCTGT
TTCAGGGATCTGTTGAACCGCGTAAGGTGGTGGATGTACTCAGAGGAACA
AAGCAAAAGAGACATCGTGATGGTTATGAAGATGGAGACACGACTTTGAG
GAAAGTTTCTTTGGCTACTGATTTCATTTGGTCCAATAATCCTCTTGAGA
TTCTTGGTTCAGTTACTTCCATAACATTTGGGGATCCGGCTTGTTCAGCA
ATCAAGGATCACGAATTGACAACAGAAGAGGTTAAAGCTCTTTGTGA
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