CB290208

Overview
NameCB290208
Unique NameCB290208
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:172..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.962e-23
Identity = 75/227 (33.04%), Postives = 99/227 (43.61%), Query Frame = 2
Query:  146 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLK----LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKCVK-KNQLWRNSKHYSISAYRINSDPEDIMA 766
            L D ++  +N+     W A  N  F N  +   K L G         LG P      +      LPKSFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CI     +N+ +S                   +P  AW ++   G+V+         C PY     C H      P C     TPKC + C       ++  KH+  S+Y I+ + ++IMA
Sbjct:   26 LSDELVNFINKQ-NTTWTAGHN--FYNVDLSYVKKLCGT-------FLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFPSGAWNFWTKKGLVSGGLYDSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMA 241          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.126e-22
Identity = 74/229 (32.31%), Postives = 101/229 (44.10%), Query Frame = 2
Query:  146 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHD----KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGC---SHPGCE------------PAYPTPKCVRKCVK-KNQLWRNSKHYSISAYRINSDPEDIMA 766
            L   ++  +N+    G +A  N  F N  +   K L G         LG P         + + LP +FD R  WP C TIS I DQG CGSCWAFGAVEA+SDR C+H    +S+ V+                   YP  AWRY+   G+V+     Y    GC   + P CE                TP+C R C    +  ++  KHY I++Y +    ++IMA
Sbjct:   26 LSSDLVNHINKLNTTG-RAGHN--FHNTDMSYVKKLCGT-------FLGGPKAPERVDFAEDMDLPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVSGGL--YDSHVGCRAYTIPPCEHHVNGSRPPCTGEGGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSEKEIMA 242          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CPR5_CAEEL (Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.621e-21
Identity = 62/166 (37.35%), Postives = 77/166 (46.39%), Query Frame = 2
Query:  326 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYFDS------TGCSHPGC-EPAYPTPKCVRKCVKKNQL---WRNSKHYSISAYRINSDPEDI 760
            +P  FDAR  WP C +I+ I DQ  CGSCWAF A EA+SDR CI  +  +N  LS                     YPI AW+++V HG+VT         C PY  +       G   P C E   PTPKCV  C  KN     +   KH+  +AY +    E I
Sbjct:   82 IPDHFDARDQWPNCMSINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQAWKWWVKHGLVTGGSYETQFGCKPYSIAPCGETVNGVKWPACPEDTEPTPKCVDSCTSKNNYATPYLQDKHFGSTAYAVGKKVEQI 247          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 65/177 (36.72%), Postives = 82/177 (46.33%), Query Frame = 2
Query:  293 VPVKTHD-KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYF-----DSTG-CSHPGC-EPAYPTPKCVRKCVKKNQ--LWRNSKHYSISAYRINSDPEDIMA 766
            V V  HD     +P +FDAR+ WP C +I+ I DQ  CGSCWAF A EA SDRFCI  +  +N  LS                   YPI+AW+Y V  G  T         C PY      ++ G  + P C +  Y TP CV KC  KN    +   KH+  +AY +      I A
Sbjct:   69 VEVVKHDINEDTIPATFDARTQWPNCMSINNIRDQSDCGSCWAFAAAEAASDRFCIASNGAVNTLLSAE-DVLSCCSNCGYGCEGGYPINAWKYLVKSGFCTGGSYEAQFGCKPYSLAPCGETVGNVTWPSCPDDGYDTPACVNKCTNKNYNVAYTADKHFGSTAYAVGKKVSQIQA 244          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CPR3_CAEEL (Cathepsin B-like cysteine proteinase 3 OS=Caenorhabditis elegans GN=cpr-3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.205e-16
Identity = 54/150 (36.00%), Postives = 67/150 (44.67%), Query Frame = 2
Query:  326 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT------EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVK--KNQLWRNSKHYSISAYRINS 745
            LP +FDAR  WP C+TI  I +Q  CGSCWAFGA E +SDR CI         +SV                  Y I A R++   G VT        C PY  S       C P   TP C   C    K + ++  KHY  SAY++ +
Sbjct:   92 LPDTFDAREKWPDCNTIKLIRNQATCGSCWAFGAAEVISDRVCIQSNGTQQPVISVEDILSCCGTTCGYGCKGGYSIEALRFWASSGAVTGGDYGGHGCMPY--SFAPCTKNC-PESTTPSCKTTCQSSYKTEEYKKDKHYGASAYKVTT 238          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CYSP2_HAECO (Cathepsin B-like cysteine proteinase 2 OS=Haemonchus contortus GN=AC-2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.056e-16
Identity = 55/171 (32.16%), Postives = 76/171 (44.44%), Query Frame = 2
Query:  311 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSHPG-------CEPAYPTPKCVRKC---VKKNQLWRNSKHYSISAYRINSDPEDIMA 766
            D  + +P S+D R  W  C+T   I DQ +CGSCWA     A+SDR CI       +++S                   +PI AW+YF++ GVV+       + C PY     C H G       C    PTP C RKC   V+K  ++R  K Y   AY +    + I +
Sbjct:   82 DPEVDIPPSYDPRDVWKNCTTFY-IRDQANCGSCWAVSTAAAISDRICIASKAEKQVNISATDIMTCCRPQCGDGCEGGWPIEAWKYFIYDGVVSGGEYLTKDVCRPY-PIHPCGHHGNDTYYGECRGTAPTPPCKRKCRPGVRK--MYRIDKRYGKDAYIVKQSVKAIQS 248          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CYSP1_HAECO (Cathepsin B-like cysteine proteinase 1 OS=Haemonchus contortus GN=AC-1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.056e-16
Identity = 55/171 (32.16%), Postives = 76/171 (44.44%), Query Frame = 2
Query:  311 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSHPG-------CEPAYPTPKCVRKC---VKKNQLWRNSKHYSISAYRINSDPEDIMA 766
            D  + +P S+D R  W  C+T   I DQ +CGSCWA     A+SDR CI       +++S                   +PI AW+YF++ GVV+       + C PY     C H G       C    PTP C RKC   V+K  ++R  K Y   AY +    + I +
Sbjct:   82 DPEVDIPPSYDPRDVWKNCTTFY-IRDQANCGSCWAVSTAAAISDRICIASKAEKQVNISATDIMTCCRPQCGDGCEGGWPIEAWKYFIYDGVVSGGEYLTKDVCRPY-PIHPCGHHGNDTYYGECRGTAPTPPCKRKCRPGVRK--MYRIDKRYGKDAYIVKQSVKAIQS 248          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CPR1_CAEEL (Gut-specific cysteine proteinase OS=Caenorhabditis elegans GN=cpr-1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.020e-15
Identity = 52/156 (33.33%), Postives = 70/156 (44.87%), Query Frame = 2
Query:  326 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF--GMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT------EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVK-KNQLWRNSKHYSISAYRINSDPEDIMA 766
            +P +FD+R+ W +C +I  I DQ  CGSCWAFGA E +SDR CI         +S +                 YPI A R++   GVVT        C PY     C+   C P   TP C   C    +  +   KH+ +SAY +  +   I A
Sbjct:   85 VPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPIISPDDLLSCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDYHGAGCKPY-PIAPCTSGNC-PESKTPSCSMSCQSGYSTAYAKDKHFGVSAYAVPKNAASIQA 238          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CYSP1_OSTOS (Cathepsin B-like cysteine proteinase 1 OS=Ostertagia ostertagi GN=CP-1 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 51/160 (31.87%), Postives = 70/160 (43.75%), Query Frame = 2
Query:  326 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI-HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSHPGCEPAY-------PTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDI 760
            +P+S+D R  W  CS++  I DQ +CGSCWA  +  A+SDR CI   G    L                    +PISA+R+    GVVT         C PY +   C H G E  Y        TP+C R+C+        S  Y   AY++ +  + I
Sbjct:   91 IPESYDPRIQWANCSSLFHIPDQANCGSCWAVSSAAAMSDRICIASKGAKQVLISAQDVVSCCTWCGDGCEGGWPISAFRFHADEGVVTGGDYNTKGSCRPY-EIHPCGHHGNETYYGECVGMADTPRCKRRCLLGYPKSYPSDRYYKKAYQLKNSVKAI 249          
The following BLAST results are available for this feature:
BLAST of CB290208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CATB_PIG2.962e-2333.04Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATB_CHICK1.126e-2232.31Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CPR5_CAEEL3.621e-2137.35Cathepsin B-like cysteine proteinase 5 OS=Caenorha... [more]
CPR4_CAEEL1.797e-2036.72Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CPR3_CAEEL1.205e-1636.00Cathepsin B-like cysteine proteinase 3 OS=Caenorha... [more]
CYSP2_HAECO2.056e-1632.16Cathepsin B-like cysteine proteinase 2 OS=Haemonch... [more]
CYSP1_HAECO2.056e-1632.16Cathepsin B-like cysteine proteinase 1 OS=Haemonch... [more]
CPR1_CAEEL1.020e-1533.33Gut-specific cysteine proteinase OS=Caenorhabditis... [more]
CYSP1_OSTOS2.128e-1331.88Cathepsin B-like cysteine proteinase 1 OS=Ostertag... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01aa10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290208 ID=CB290208; Name=CB290208; organism=Citrus sinensis; type=EST; length=766bp
GCACTAGGCTTCGTCCTTCCCGAGCCAGTCATCCATGGCTTCATCTCACC
TCTTTCTTACTACATGTTTGTTAATTCTTGGCGTTATCTCCTCCCAGACT
TTTGCAGAGGGAGTGGTTTCCAAGCTCAAGCTTGATTCTCATATTCTCCA
GGATTCAATCATCAAAGAAGTGAATGAGAACCCTAAGGCTGGATGGAAAG
CTGCCAGAAATCCTCAATTTTCCAATTACACTGTTGGGCAATTTAAGCAC
CTTCTTGGAGTCAAGCCAACACCTAAAGGGCTGCTCTTGGGTGTCCCTGT
TAAAACTCATGACAAATCCTTGAAGTTGCCTAAAAGCTTTGATGCAAGGT
CCGCTTGGCCACAATGCAGCACCATTAGTAGGATCCTAGATCAGGGCCAT
TGTGGTTCTTGTTGGGCTTTTGGTGCTGTTGAAGCGCTATCTGATCGTTT
CTGCATCCATTTTGGCATGAACCTATCTCTATCAGTTAATGATCTTTTAG
CCTGCTGTGGCTTTTTGTGTGGAGATGGTTGTGACGGGGGTTATCCAATT
TCTGCATGGCGATACTTTGTCCACCATGGTGTTGTTACCGAAGAGTGTGA
TCCCTACTTTGATAGTACTGGCTGTTCCCACCCTGGTTGTGAGCCGGCAT
ATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCAGCTTTGG
AGGAATTCAAAGCACTACAGTATTAGTGCATATAGAATCAATTCTGATCC
AGAGGACATAATGGCA
back to top