CB290215

Overview
NameCB290215
Unique NameCB290215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290215_ssr286 microsatellite CB290215_ssr286:286..297. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV1_ORYSI (Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Oryza sativa subsp. indica GN=CIN1 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 9.511e-38
Identity = 71/116 (61.21%), Postives = 87/116 (75.00%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTG--STNESVQVQNLAYPADPSDPLL 766
            RT +HFQP  NW+NDPNGP++YKGWYHLFYQYNP GA+WG+IVW H+VS+DLI+W  L  A+  D   D  G W+GSATIL DG   +LYTG    N + QVQN+A+P + SDPLL
Sbjct:   49 RTGYHFQPPMNWINDPNGPLYYKGWYHLFYQYNPKGAVWGNIVWAHSVSQDLINWIALEPAIKPDIPSDQYGCWSGSATILPDGTPAILYTGIDRPNINYQVQNIAFPKNASDPLL 164          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV3_DAUCA (Beta-fructofuranosidase, insoluble isoenzyme 3 OS=Daucus carota GN=INV3 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.767e-37
Identity = 70/117 (59.83%), Postives = 89/117 (76.07%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTN---ESVQVQNLAYPADPSDPLL 766
            RT +HFQPQK+W+NDPNGP+FYKG+YHLFYQYNP G++WG+IVW H+VSKDLI+W  L  A+   + +D  G W+GSATIL   K ++LYTG  +   E+ QVQN A PA+ SDP L
Sbjct:   54 RTGYHFQPQKHWINDPNGPMFYKGYYHLFYQYNPKGSVWGNIVWAHSVSKDLINWIALEPAIFPSKPFDQYGCWSGSATILPGNKPVILYTGIVSPDPENAQVQNYAVPANYSDPFL 170          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV4_ARATH (Beta-fructofuranosidase, insoluble isoenzyme CWINV4 OS=Arabidopsis thaliana GN=CWINV4 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.614e-37
Identity = 66/116 (56.90%), Postives = 84/116 (72.41%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLLIK 772
            R +FHFQP K+W+NDPNGPV+YKG YHLFYQYN  GA+WG+I+W H+VSKDL++W  L  A+   +W+DI G W+GS TI+     ++LYTG      Q+QN A P DPSDP L K
Sbjct:   50 RPSFHFQPPKHWINDPNGPVYYKGLYHLFYQYNTKGAVWGNIIWAHSVSKDLVNWEALEPALSPSKWFDIGGTWSGSITIVPGKGPIILYTGVNQNETQLQNYAIPEDPSDPYLRK 165          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV1_PEA (Beta-fructofuranosidase, cell wall isozyme OS=Pisum sativum GN=BFRUCT1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.614e-37
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            RTA+HFQP KNW+NDPNGP+ Y G+YHLFYQYNP GA+WG+IVW H+VSKDL++W  L  A+   Q  DI G W+GSATIL  GK  +LYTG    + QVQN+A P + SDPLL
Sbjct:   47 RTAYHFQPLKNWINDPNGPMRYGGFYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWTPLDHAIHPSQPSDIKGCWSGSATILPGGKPAILYTGIDPNNHQVQNIAIPKNMSDPLL 160          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV1_ARATH (Beta-fructofuranosidase, insoluble isoenzyme CWINV1 OS=Arabidopsis thaliana GN=CWINV1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.373e-36
Identity = 69/114 (60.53%), Postives = 85/114 (74.56%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            RT FHFQP KNWMNDPNGP+ YKG YHLFYQ+NP GA+WG+IVW H+ S DLI+W   P A+     +DI G W+GSATIL +GK ++LYTG   ++ QVQN+A P + SDP L
Sbjct:   52 RTGFHFQPPKNWMNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTDLINWDPHPPAIFPSAPFDINGCWSGSATILPNGKPVILYTGIDPKNQQVQNIAEPKNLSDPYL 165          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV2_DAUCA (Beta-fructofuranosidase, insoluble isoenzyme 2 OS=Daucus carota GN=INV2 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.794e-36
Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNES---VQVQNLAYPADPSDPLL 766
            RT +HFQP+K+W+NDPNGP++YKG+YHLFYQYNP GA+WG+IVW H++SKDLI+W  L  A+   + +D  G W+GSAT+L  GK +++YTG    S    QVQN A PA+ SDP L
Sbjct:   61 RTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAVWGNIVWAHSISKDLINWVALEPAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVNTQVQNFAVPANYSDPYL 177          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV2_ARATH (Beta-fructofuranosidase, insoluble isoenzyme CWINV2 OS=Arabidopsis thaliana GN=CWINV2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.794e-36
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            RTA+HFQP ++W+NDPN P+ YKG YHLFYQYNP GA+WG+IVW H+VSKDLI+W  L  A+   +W+DI G W+GSAT +     ++LYTG T    Q+QN A P D SDP L
Sbjct:   48 RTAYHFQPPRHWINDPNAPMLYKGVYHLFYQYNPKGAVWGNIVWAHSVSKDLINWEALEPAIYPSKWFDINGTWSGSATHVPGKGPVILYTGITENQTQIQNYAIPQDLSDPYL 161          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV4_ORYSJ (Beta-fructofuranosidase, insoluble isoenzyme 4 OS=Oryza sativa subsp. japonica GN=CIN4 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.060e-36
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            RT +HFQP KNW+NDPNGP++Y G YH FYQYNPNG++WG+IVWGH+VS DLI+W  L  A+  +   DI G WTGSATIL+  + +++YTG+  E  QVQN+  P + SDP L
Sbjct:   60 RTGYHFQPPKNWINDPNGPMYYNGIYHEFYQYNPNGSVWGNIVWGHSVSTDLINWIRLEPAIEGNTPSDINGCWTGSATILTGDQPVIIYTGADTEKRQVQNIVLPKNRSDPYL 173          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV2_ORYSJ (Beta-fructofuranosidase, insoluble isoenzyme 2 OS=Oryza sativa subsp. japonica GN=CIN2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.060e-36
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESV--QVQNLAYPADPSDPLL 766
            RT +HFQP KNW+NDPN P++YKGWYHLFYQYNP GA+WG+IVW H+VS+DLI+W  L  A+      D  G W+GSAT+++DG  +++YTG     V  QVQN+A P + SDPLL
Sbjct:   55 RTGYHFQPPKNWINDPNAPMYYKGWYHLFYQYNPKGAVWGNIVWAHSVSRDLINWVALKPAIEPSIRADKYGCWSGSATMMADGTPVIMYTGVNRPDVNYQVQNVALPRNGSDPLL 170          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV2_ORYSI (Beta-fructofuranosidase, insoluble isoenzyme 2 OS=Oryza sativa subsp. indica GN=CIN2 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.060e-36
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESV--QVQNLAYPADPSDPLL 766
            RT +HFQP KNW+NDPN P++YKGWYHLFYQYNP GA+WG+IVW H+VS+DLI+W  L  A+      D  G W+GSAT+++DG  +++YTG     V  QVQN+A P + SDPLL
Sbjct:   55 RTGYHFQPPKNWINDPNAPMYYKGWYHLFYQYNPKGAVWGNIVWAHSVSRDLINWVALKPAIEPSIRADKYGCWSGSATMMADGTPVIMYTGVNRPDVNYQVQNVALPRNGSDPLL 170          
The following BLAST results are available for this feature:
BLAST of CB290215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
INV1_ORYSI9.511e-3861.21Beta-fructofuranosidase, insoluble isoenzyme 1 OS=... [more]
INV3_DAUCA2.767e-3759.83Beta-fructofuranosidase, insoluble isoenzyme 3 OS=... [more]
INV4_ARATH3.614e-3756.90Beta-fructofuranosidase, insoluble isoenzyme CWINV... [more]
INV1_PEA3.614e-3762.28Beta-fructofuranosidase, cell wall isozyme OS=Pisu... [more]
INV1_ARATH1.373e-3660.53Beta-fructofuranosidase, insoluble isoenzyme CWINV... [more]
INV2_DAUCA1.794e-3657.26Beta-fructofuranosidase, insoluble isoenzyme 2 OS=... [more]
INV2_ARATH1.794e-3657.89Beta-fructofuranosidase, insoluble isoenzyme CWINV... [more]
INV4_ORYSJ3.060e-3657.89Beta-fructofuranosidase, insoluble isoenzyme 4 OS=... [more]
INV2_ORYSJ3.060e-3657.76Beta-fructofuranosidase, insoluble isoenzyme 2 OS=... [more]
INV2_ORYSI3.060e-3657.76Beta-fructofuranosidase, insoluble isoenzyme 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290215 ID=CB290215; Name=CB290215; organism=Citrus sinensis; type=EST; length=774bp
GCCCTATGATTGAAACCAACAAATTTATCAAGCAGCAGCCCTCTAGTGCG
CCACATACATTCGTTAATCAATGGCAGATTCTAATGTATCCTACAATCCT
CTCCCGGACGGGGAACGTCCGCGGCCAACTCGCCGGAGATCCATCGTCTT
GGTTCTATCCGGTTTGTTGGTCGTTGGTTTTTTAGTTGCATTATTATCCG
ATAATGGATCAATAGCCCCTGCTAACGTTATTGATAATGACAATAATAAT
GTTAATGATAATGCAAAAAATGGGCTTAATGATGTGTCGTCGTCGTCGAA
AGAGCCCGAGAGACTCCGGCCGTTTACGAGTGCCTCGTCGGCCGGGGTGT
CTGAGAAGTCGAACCGGCGGTTTGGTTCAAGGACGGCGTCGTATCCCTGG
ACCAATAATATGCTGTCGTGGCAAAGGACCGCCTTCCACTTTCAACCCCA
AAAGAATTGGATGAATGATCCTAATGGTCCAGTGTTTTACAAAGGATGGT
ACCATTTGTTCTACCAGTACAACCCAAATGGCGCAATATGGGGTGACATA
GTGTGGGGGCATGCTGTGTCAAAGGACCTGATCCATTGGTATCACCTCCC
GTTGGCCATGGTTGCCGATCAATGGTATGATATTATGGGTGTCTGGACCG
GCTCTGCTACAATCCTATCTGATGGAAAACTTATGATGTTGTACACTGGA
TCCACCAACGAGTCTGTGCAGGTCCAAAATCTCGCATATCCTGCCGACCC
ATCTGATCCTCTCCTCATCAAATG
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