CB290216

Overview
NameCB290216
Unique NameCB290216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:422..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.854e-26
Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = -1
Query:  542 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQN 781
            FQLY SGIFTG C  S +H +T VGYGTEN  D+WIVKNSWG +WGE+GYIR ERN+     GKCGI   ASYP+KKG N
Sbjct:  143 FQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENP-DGKCGITRFASYPVKKGTN 221          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.498e-25
Identity = 54/81 (66.67%), Postives = 58/81 (71.60%), Query Frame = -1
Query:  542 FQLYESGIFTGRCGTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQN 781
            FQ Y  G+FTG CGT LDHGV  VGYGT  +G  YW VKNSWG  WGE GYIRMER ++    G CGIAMEASYPIKK  N
Sbjct:  268 FQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDK-EGLCGIAMEASYPIKKSSN 347          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.619e-24
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = -1
Query:  554 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 784
            AFQLY+SG+ TG CG SLDHGV  VGYG+ +G DYWI++NSWG +WG++GY++++RN+     GKCGIAM  SYP K
Sbjct:  274 AFQLYKSGVMTGTCGISLDHGVVVVGYGSTSGEDYWIIRNSWGLNWGDSGYVKLQRNIDDPF-GKCGIAMMPSYPTK 349          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.619e-24
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = -1
Query:  554 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 784
            AF+ Y SGIFTG CGT++DH VT VGYGTE G DYWIVKNSW ++WGE GY+R+ RNV G   G CGIA   SYP+K
Sbjct:  269 AFKHYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGG--AGTCGIATMPSYPVK 343          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 1.619e-24
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = -1
Query:  554 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 784
            AF+ Y SGIFTG CGT++DH VT VGYGTE G DYWIVKNSW ++WGE GY+R+ RNV G   G CGIA   SYP+K
Sbjct:  269 AFKQYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGG--AGTCGIATMPSYPVK 343          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.154e-24
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = -1
Query:  554 AFQLYESGIFTGRCGTSLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 784
            AF  Y  G+FTG CGT LDHGV  VGYG  E+G  YW VKNSWG SWGE GYIR+E++ +G   G CGIAMEASYP+K
Sbjct:  278 AFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKD-SGASGGLCGIAMEASYPVK 354          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.050e-23
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = -1
Query:  554 AFQLYESGIFTGRCGTSLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 784
            AF  Y  G+FTG CGT LDHGV  VGYG  E+G  YW VKNSWG SWGE GYIR+E++ +G   G CGIAMEASYP+K
Sbjct:  278 AFMFYSEGVFTGDCGTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKD-SGASGGLCGIAMEASYPVK 354          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.886e-23
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  554 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 781
            FQ Y SGIFTG CGT+ +HGV  VGYGT++G +YWIV+NSWG +WG  GYI MERNVA +  G CGIA   SYP K
Sbjct:  140 FQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASS-AGLCGIAQLPSYPTK 214          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.161e-22
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = -1
Query:  542 FQLYESGIFTGRCGTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQN 781
            FQ Y  G+FTG C T L+HGV  VGYGT  +G +YWIV+NSWG  WGE GYIRM+RN++    G CGIAM ASYPIK   +
Sbjct:  270 FQFYSEGVFTGDCNTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNIS-KKEGLCGIAMMASYPIKNSSD 349          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.377e-22
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = -1
Query:  554 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 781
            FQ Y+ G+F G+CGT LDHGV AVGYG+  G+DY IVKNSWG  WGE G+IRM+RN  G   G CGI   ASYP K
Sbjct:  279 FQFYKGGVFNGKCGTDLDHGVAAVGYGSSKGSDYVIVKNSWGPRWGEKGFIRMKRN-TGKPEGLCGINKMASYPTK 353          
The following BLAST results are available for this feature:
BLAST of CB290216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CPGP2_ZINOF3.854e-2666.25Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CYSEP_RICCO2.498e-2566.67Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CPR1_ARATH1.619e-2461.04Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
ACTN_ACTDE1.619e-2466.23Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
ACTN_ACTCH1.619e-2466.23Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CYSP2_HORVU6.154e-2465.38Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CYSP1_HORVU1.050e-2365.38Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
ERVB_TABDI8.886e-2364.47Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
CYSEP_VIGMU1.161e-2260.49Vignain OS=Vigna mungo PE=1 SV=1[more]
XCP1_ARATH3.377e-2263.16Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290216 ID=CB290216; Name=CB290216; organism=Citrus sinensis; type=EST; length=784bp
ATTCCTCTAATTCAACGCCAATAGATAACTTACAACGCTATATACCAATA
CCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAA
CGTTTGGAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCAT
TCACAAGCACGAATATTTTCATCCTCCTTTCGGCCTTCCACTGCTCTTAC
AGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGC
CCAGTAAGGTTTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGT
TGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAG
TCATGTGGGCAGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAG
CGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGC
AGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGA
GGCTTTGTTGGAAATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCC
TTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGA
GAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAG
CTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGT
GCCATATCCAACAGCAGTAACACCATGGTCCAAAGATGTCCCACATCTTC
CCGTAAATATACCCGATTCATATAACTGGAATGC
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