CB290216

Overview
NameCB290216
Unique NameCB290216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:422..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.504e-17
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = -1
Query:  557 AFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 784
            +FQ Y SG++    C  S LDH V AVGYG+E G D+W+VKNSW +SWG+AGYI+M RN        CGIA  ASYP+
Sbjct:  249 SFQFYSSGVYYEPSCSPSYLDHAVLAVGYGSEGGQDFWLVKNSWATSWGDAGYIKMSRN----RNNNCGIATVASYPL 322          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.579e-17
Identity = 47/76 (61.84%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  554 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 781
            FQ Y SGIF+G CGT L+HGVT VGY     A+YWIV+NSWG  WGE GYIRM R V G   G CGIA    YP K
Sbjct:  139 FQQYSSGIFSGPCGTKLNHGVTIVGYQ----ANYWIVRNSWGRYWGEKGYIRMLR-VGG--CGLCGIARLPYYPTK 207          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.516e-17
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  557 FQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 781
            F++Y+SG++T   CGTS   ++H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          CGIA  ASYPI
Sbjct:  287 FRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCGIATCASYPI 360          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.243e-16
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = -1
Query:  560 AFQLYESGIFTG-RCGT-SLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQLY  G++    C   +LDHGV  VGYGT E+G DYW+VKNSWG++WGE GYI+M RN       +CGIA  +SYP
Sbjct:  264 SFQLYSEGVYNEPECDEQNLDHGVLVVGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARN----QNNQCGIATASSYP 337          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.769e-16
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  560 AFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y +G++    C +S LDH V AVGYG+E G D+W+VKNSW +SWGE+GYI+M RN        CGIA +A YP
Sbjct:  248 SFQSYYTGVYYEPSCSSSQLDHAVLAVGYGSEGGQDFWLVKNSWATSWGESGYIKMARN----RNNNCGIATDACYP 320          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.769e-16
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = -1
Query:  560 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 781
            FQ Y+SG+F G CGTSL+H VTA+GY    G D  I    WG+ WGEAGYIRM R+V+ + +G CGIA++  YP
Sbjct:  140 FQYYKSGVFNGPCGTSLNHAVTAIGY----GQDSIIYPKKWGAKWGEAGYIRMARDVSSS-SGICGIAIDPLYP 208          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  557 AFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 784
            +FQLY +G++     +S  LDHGV AVG GT+NG DY+IVKNSWG SWG  GYI M RN        CGI+  ASYPI
Sbjct:  263 SFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYIHMARN----KDNNCGISTMASYPI 336          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  557 FQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 781
            F+LY+SG++T   CGT+   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CG+A  ASYPI
Sbjct:  285 FRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMG-----KNMCGVATCASYPI 358          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  554 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 781
            FQLY  GIF G CG  +DH V AVGY    G +Y ++KNSWG+ WGE GYIR++R   G   G CG+   + YP+K
Sbjct:  274 FQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRG-TGNSYGVCGLYTSSFYPVK 344          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.056e-16
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  551 FQLYESGIFTGRCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKK 781
            F LY  GI+ G   TS   ++H V  VGYG+ +G DYWI KNSWG  WGE GYI ++RN  G L G CG+   ASYP K+
Sbjct:  280 FHLYTGGIYDGENCTSPYGINHFVLLVGYGSADGVDYWIAKNSWGFDWGEDGYIWIQRN-TGNLLGVCGMNYFASYPTKE 358          
The following BLAST results are available for this feature:
BLAST of CB290216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CYSP2_HOMAM2.504e-1755.13Digestive cysteine proteinase 2 OS=Homarus america... [more]
ERVC_TABDI5.579e-1761.84Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]
ORYC_ORYSJ9.516e-1751.90Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATL_SARPE1.243e-1655.13Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
CYSP1_HOMAM2.769e-1653.25Digestive cysteine proteinase 1 OS=Homarus america... [more]
BROM2_ANACO2.769e-1655.41Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CYSP3_DICDI4.723e-1656.41Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CYSP2_MAIZE4.723e-1649.37Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
PAPA1_CARPA6.168e-1651.32Papain OS=Carica papaya PE=1 SV=1[more]
P34_SOYBN8.056e-1652.50P34 probable thiol protease OS=Glycine max PE=1 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ab04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290216 ID=CB290216; Name=CB290216; organism=Citrus sinensis; type=EST; length=784bp
ATTCCTCTAATTCAACGCCAATAGATAACTTACAACGCTATATACCAATA
CCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAA
CGTTTGGAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCAT
TCACAAGCACGAATATTTTCATCCTCCTTTCGGCCTTCCACTGCTCTTAC
AGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGC
CCAGTAAGGTTTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGT
TGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAG
TCATGTGGGCAGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAG
CGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGC
AGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGA
GGCTTTGTTGGAAATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCC
TTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGA
GAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAG
CTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGT
GCCATATCCAACAGCAGTAACACCATGGTCCAAAGATGTCCCACATCTTC
CCGTAAATATACCCGATTCATATAACTGGAATGC
back to top