CB290216

Overview
NameCB290216
Unique NameCB290216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:422..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  560 AFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +F LY+SG++    C  +++HGV  VGYGT +G DYW+VKNSWG  +G+ GYIRM RN        CGIA   SYP
Sbjct:  257 SFFLYQSGVYDDPSCTENMNHGVLVVGYGTLDGKDYWLVKNSWGLHFGDQGYIRMARN----NKNHCGIASYCSYP 328          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.163e-14
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  560 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +F LY SG++    C  +++HGV  VGYG  NG DYW+VKNSWG ++G+ GYIRM RN        CGIA   SYP
Sbjct:  258 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDQGYIRMARNSG----NHCGIASYPSYP 329          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = -1
Query:  557 YESGIF--TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 772
            Y  GIF  +   G +L HGV  VGYG ENG  YWI+KN+WG+ WGE+GYIR+ R+        CG+   ASYPI
Sbjct:  253 YGGGIFDDSSCLGDNLHHGVNVVGYGIENGQKYWIIKNTWGADWGESGYIRLIRDT----DHSCGVEKMASYPI 322          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.984e-14
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  560 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +F LY SG++    C  +++HGV  VGYG  NG +YW+VKNSWG ++GE GYIRM RN        CGIA   SYP
Sbjct:  258 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG----NHCGIASFPSYP 329          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP_THEAN (Cysteine proteinase OS=Theileria annulata GN=TACP PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = -1
Query:  557 QLYESGIFTGRCGTSLDHGVTAVGYGT--ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 778
            +LY  GIFTG+CG  L+H V  VG G   E G  YWI+KNSWG  WGE G++R++R   G    KCGI      PI
Sbjct:  364 KLYSGGIFTGKCGGELNHAVLLVGEGVDHETGMRYWIIKNSWGEDWGENGFLRLQRTKKG--LDKCGILTFGLNPI 437          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.384e-14
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  560 AFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +F  Y+SG++    C  +++HGV  VGYGT +G DYW+VKNSWG ++G+ GYIRM RN        CGIA   SYP
Sbjct:  267 SFFFYKSGVYDDPSCTGNVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARN----NKNHCGIASYCSYP 338          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.773e-14
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = -1
Query:  557 FQLYESGIFTGR-CGTSLD---HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 781
            F +Y+SG+++ + C  + D   H V AVGYG +NG  YWIVKNSWGS WGE GY  +ER         CG+A  ASYPI
Sbjct:  257 FLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERG-----KNMCGLAACASYPI 330          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP_THEPA (Cysteine proteinase OS=Theileria parva GN=TP03_0285 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.540e-14
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = -1
Query:  581 YESGIFTGRCGTSLDHGVTAVGYGTENGAD--YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 772
            Y+SG+FTG CG SL+H V  VG G +      YW+V+NSWG+ WGE GY+R+ER   G  T KCG+
Sbjct:  367 YKSGVFTGECGKSLNHAVVLVGEGYDEVTKKRYWVVQNSWGTDWGENGYMRLERTNMG--TDKCGV 430          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 44/97 (45.36%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  557 AFQLYESGIF-TGRCGT-SLDHGVTAVGYGTENGA-------------------DYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 784
            +FQLY SGI+    C + +LDHGV AVGYG+ +G+                   +YWIVKNSWG+SWG  GYI M RN        CGIA  AS+P+
Sbjct:  251 SFQLYTSGIYYEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIEGYILMSRN----RDNNCGIASSASFPV 343          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = -1
Query:  557 FQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 781
            F +Y+SG+++     +    ++H V AVGYG +NG  YWIVKNSWGS+WG  GY  +ER         CG+A  ASYPI
Sbjct:  257 FMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSNWGNNGYFLIERG-----KNMCGLAACASYPI 330          
The following BLAST results are available for this feature:
BLAST of CB290216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CATS_RAT8.907e-1551.32Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATS_CANFA1.163e-1451.32Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CATLL_PHACE1.519e-1451.35Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
CATS_HUMAN1.984e-1451.32Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CYSP_THEAN2.591e-1450.00Cysteine proteinase OS=Theileria annulata GN=TACP ... [more]
CATS_MOUSE3.384e-1450.00Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATH_MOUSE5.773e-1450.63Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CYSP_THEPA7.540e-1453.03Cysteine proteinase OS=Theileria parva GN=TP03_028... [more]
CYSP5_DICDI1.286e-1345.36Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
CATH_RAT1.286e-1346.84Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290216 ID=CB290216; Name=CB290216; organism=Citrus sinensis; type=EST; length=784bp
ATTCCTCTAATTCAACGCCAATAGATAACTTACAACGCTATATACCAATA
CCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAA
CGTTTGGAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCAT
TCACAAGCACGAATATTTTCATCCTCCTTTCGGCCTTCCACTGCTCTTAC
AGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGC
CCAGTAAGGTTTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGT
TGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAG
TCATGTGGGCAGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAG
CGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGC
AGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGA
GGCTTTGTTGGAAATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCC
TTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGA
GAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAG
CTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGT
GCCATATCCAACAGCAGTAACACCATGGTCCAAAGATGTCCCACATCTTC
CCGTAAATATACCCGATTCATATAACTGGAATGC
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