CB290216

Overview
NameCB290216
Unique NameCB290216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:422..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATK_MACFA (Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = -1
Query:  560 AFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y  G++      S  L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+P
Sbjct:  255 SFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASFP 327          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = -1
Query:  560 AFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y  G++      S  L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+P
Sbjct:  255 SFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASFP 327          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = -1
Query:  560 AFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y  G++    C + +L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+P
Sbjct:  256 SFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASFP 328          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATK_BOVIN (Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = -1
Query:  560 AFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y  G++    C + +L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+P
Sbjct:  255 SFQFYRKGVYYDENCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASFP 327          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = -1
Query:  557 FQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 781
            F +Y +GI++     +    ++H V AVGYG +NG  YWIVKNSWG  WG  GY  +ER         CG+A  ASYPI
Sbjct:  259 FMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKNGIPYWIVKNSWGPQWGMNGYFLIERG-----KNMCGLAACASYPI 332          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVN (Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12
Identity = 42/106 (39.62%), Postives = 51/106 (48.11%), Query Frame = -1
Query:  557 FQLYESGIFTGRCGTSLDHGVTAVGYGT-----------------------EN--GAD------YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 781
            F LY  G+F G C   L+H V  VGYG                        EN  G D      YWIV+NSWG +WGE GYIR++RN AG   G CG+  +  +PI
Sbjct:  401 FVLYSGGVFDGECNPELNHSVLLVGYGQVKKSLAFEDSHSNVDSNLIKKYKENIKGDDDDDIIYYWIVRNSWGPNWGEGGYIRIKRNKAGD-DGFCGVGSDVFFPI 505          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  560 AFQLYESGI-FTGRCGTS-LDHGVTAVGYG---TENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y+SGI F   C +  LDHGV  VGYG   T++   +WIVKNSWG  WG  GY++M ++        CGIA  ASYP
Sbjct:  256 SFQFYKSGIYFDPDCSSKDLDHGVLVVGYGFEGTDSNNKFWIVKNSWGPEWGWNGYVKMAKD----QNNHCGIATAASYP 331          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = -1
Query:  560 AFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGAD-YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y+SGI+     +S  LDHGV  VGYG E   + +WIVKNSWG  WG  GY++M ++        CGIA  ASYP
Sbjct:  142 SFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTNNKFWIVKNSWGPEWGNKGYVKMAKD----QNNHCGIATAASYP 215          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = -1
Query:  560 AFQLYESGIFTGRCGTS--LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y+SGI+     +S  LDHGV  VGYG E    N   +WIVKNSWG  WG  GY++M ++        CGIA  ASYP
Sbjct:  256 SFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKD----QNNHCGIATAASYP 332          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  560 AFQLYESGIFTGRCGTS--LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y+SGI+     +S  LDHGV  VGYG E    N + +WIVKNSWG  WG  GY++M ++        CGI+  ASYP
Sbjct:  256 SFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNSSKFWIVKNSWGPEWGWNGYVKMAKD----QNNHCGISTAASYP 332          
The following BLAST results are available for this feature:
BLAST of CB290216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CATK_MACFA1.422e-1246.75Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV... [more]
CATK_HUMAN1.422e-1246.75Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
CATK_CANFA1.422e-1246.75Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
CATK_BOVIN1.422e-1246.75Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2[more]
CATH_HUMAN1.422e-1245.57Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CYSP_PLAVN2.425e-1239.62Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=... [more]
CATL1_CANFA2.425e-1248.75Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]
CATL1_SHEEP4.137e-1248.72Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CATL2_BOVIN5.403e-1248.15Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CATL1_PIG5.403e-1246.91Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290216 ID=CB290216; Name=CB290216; organism=Citrus sinensis; type=EST; length=784bp
ATTCCTCTAATTCAACGCCAATAGATAACTTACAACGCTATATACCAATA
CCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAA
CGTTTGGAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCAT
TCACAAGCACGAATATTTTCATCCTCCTTTCGGCCTTCCACTGCTCTTAC
AGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGC
CCAGTAAGGTTTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGT
TGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAG
TCATGTGGGCAGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAG
CGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGC
AGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGA
GGCTTTGTTGGAAATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCC
TTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGA
GAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAG
CTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGT
GCCATATCCAACAGCAGTAACACCATGGTCCAAAGATGTCCCACATCTTC
CCGTAAATATACCCGATTCATATAACTGGAATGC
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