CB290216

Overview
NameCB290216
Unique NameCB290216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:422..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = -1
Query:  557 AFQLYESGIF-TGRCGT-SLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 784
            + Q Y SGI+    C + +LDHGV  VGYG E    N   YW+VKNSWGS WG  GYI+    +A      CG+A  ASYP+
Sbjct:  255 SLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNKYWLVKNSWGSEWGMEGYIK----IAKDRDNHCGLATAASYPV 332          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = -1
Query:  560 AFQLYESGIFTGRCGTS--LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y+SGI+     +S  LDHGV  VGYG E    N   +WIVKNSWG  WG  GY++M ++        CGIA  ASYP
Sbjct:  256 SFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKD----QNNHCGIATAASYP 332          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = -1
Query:  560 AFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y  G++    C   +++H V  VGYGT+ G  YWI+KNSWG SWG  GY+ + RN        CGI   AS+P
Sbjct:  255 SFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQKGNKYWIIKNSWGESWGNKGYVLLARN----KNNACGITNLASFP 327          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 35/79 (44.30%), Postives = 45/79 (56.96%), Query Frame = -1
Query:  557 FQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 781
            F +Y  GI++     +    ++H V AVGYG E G  YWIVKNSWG +WG  GY  +ER         CG+A  AS+PI
Sbjct:  259 FMMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEEKGIPYWIVKNSWGPNWGMKGYFLIERG-----KNMCGLAACASFPI 332          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = -1
Query:  560 AFQLYESGIFTG--RCGTSL-DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQLY+ G      +C + + +H VTAVGYG+ +   YWI++NSWG+SWG+AGY  + R+        CGI  +++YP
Sbjct:  229 SFQLYKKGTIYSDTKCRSRMMNHCVTAVGYGSNSNGKYWIIRNSWGTSWGDAGYFLLARD----SNNMCGIGRDSNYP 302          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CFAD_DICDI (Counting factor associated protein D OS=Dictyostelium discoideum GN=cfaD PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.057e-12
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = -1
Query:  557 FQLYESGIFTGRCGTS----LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 781
            F+ Y SG++      +    LDH V A+GYGT  G DY++VKNSW ++WG  GY+ M RN        CG++ +A+YPI
Sbjct:  453 FRYYMSGVYNNPACKNGLDDLDHEVLAIGYGTYQGQDYFLVKNSWSTNWGMDGYVYMARND----NNLCGVSSQATYPI 527          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.057e-12
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = -1
Query:  560 FQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 781
            FQLY+SG +T  +C  +   L+H V AVGYG  +G + WIV+NSWG+SWG+ GYI M   + G     CG+A +  YP
Sbjct:  232 FQLYKSGAYTDTKCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTSWGDKGYINMV--IEG---NTCGVATDPLYP 304          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 42/161 (26.09%), Postives = 61/161 (37.89%), Query Frame = -1
Query:  302 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKD 784
            +F  Y+SG+ T   G  L+HGV  VGY       YW++KNSWG  WGE GY+R+   V   L  +  ++         G +                +C +  +C +   C       N C   G        C     + C +    C V  G C  + D
Sbjct:  269 SFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNACLLSEYPVSAHVRESAAPGTSTSSETPAPRPVMVEQVICFD-KNCTQG--CRKTLIKANECHKNGGGGASMIKCSPQKVTMCTYSNEFC-VGGGLCFETPD 425          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 42/161 (26.09%), Postives = 61/161 (37.89%), Query Frame = -1
Query:  302 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKD 784
            +F  Y+SG+ T   G  L+HGV  VGY       YW++KNSWG  WGE GY+R+   V   L  +  ++         G +                +C +  +C +   C       N C   G        C     + C +    C V  G C  + D
Sbjct:  270 SFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNACLLSEYPVSAHVRESAAPGTSTSSETPAPRPVMVEQVICFD-KNCTQG--CRKTLIKANECHKNGGGGASMIKCSPQKVTMCTYSNEFC-VGGGLCFETPD 426          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.204e-11
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = -1
Query:  560 FQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 781
            FQLY+SG +T  +C  +   L+H V AVGYG  +G + WIV+NSWG+ WGE GYI M   + G     CG+A +  YP
Sbjct:  237 FQLYKSGAYTDTQCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGEKGYINMV--IEG---NTCGVATDPLYP 309          
The following BLAST results are available for this feature:
BLAST of CB290216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CATL1_MOUSE5.403e-1247.56Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
CATL1_BOVIN5.403e-1248.15Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
CATK_RAT5.403e-1244.16Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
CATH_BOVIN5.403e-1244.30Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
ACP1_ENTHI5.403e-1242.31Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
CFAD_DICDI7.057e-1243.04Counting factor associated protein D OS=Dictyostel... [more]
ACP2_ENTHI7.057e-1247.44Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]
LMCPB_LEIME9.217e-1226.09Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
CYSP2_LEIPI9.217e-1226.09Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
CPP1_ENTHI1.204e-1147.44Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290216 ID=CB290216; Name=CB290216; organism=Citrus sinensis; type=EST; length=784bp
ATTCCTCTAATTCAACGCCAATAGATAACTTACAACGCTATATACCAATA
CCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAA
CGTTTGGAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCAT
TCACAAGCACGAATATTTTCATCCTCCTTTCGGCCTTCCACTGCTCTTAC
AGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGC
CCAGTAAGGTTTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGT
TGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAG
TCATGTGGGCAGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAG
CGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGC
AGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGA
GGCTTTGTTGGAAATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCC
TTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGA
GAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAG
CTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGT
GCCATATCCAACAGCAGTAACACCATGGTCCAAAGATGTCCCACATCTTC
CCGTAAATATACCCGATTCATATAACTGGAATGC
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