CB290233

Overview
NameCB290233
Unique NameCB290233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290233 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.119e-42
Identity = 90/111 (81.08%), Postives = 97/111 (87.39%), Query Frame = 3
Query:  162 ISKDGG--GVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 488
            + K+ G  G +        ++ETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   30 LPKESGSSGADKKKKKSKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140          
BLAST of CB290233 vs. ExPASy Swiss-Prot
Match: H2B2_MAIZE (Histone H2B.2 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.119e-42
Identity = 89/107 (83.18%), Postives = 95/107 (88.79%), Query Frame = 3
Query:  168 KDGGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 488
            K+GG  +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 KEGGEGKRGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CB290233 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 3.614e-42
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 3
Query:  177 GGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 488
            GG +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   33 GGADKKKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136          
BLAST of CB290233 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.721e-42
Identity = 89/105 (84.76%), Postives = 93/105 (88.57%), Query Frame = 3
Query:  174 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 488
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CB290233 vs. ExPASy Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 171.014 bits (432), Expect = 4.721e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 3
Query:  213 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 488
            +VETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   51 SVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSN 142          
BLAST of CB290233 vs. ExPASy Swiss-Prot
Match: H2B4_MAIZE (Histone H2B.4 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 6.165e-42
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 3
Query:  177 GGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 488
            GG +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   34 GGEKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of CB290233 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 6.165e-42
Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 3
Query:  168 KDGGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 488
            K+GG  +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPT+TSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   47 KEGGEGKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CB290233 vs. ExPASy Swiss-Prot
Match: H2B5_MAIZE (Histone H2B.5 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 8.052e-42
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 3
Query:  177 GGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 488
            GG +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   51 GGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 154          
BLAST of CB290233 vs. ExPASy Swiss-Prot
Match: H2B1_WHEAT (Histone H2B.1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.052e-41
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 3
Query:  177 GGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 488
            GG +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GGDKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 152          
BLAST of CB290233 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.374e-41
Identity = 88/105 (83.81%), Postives = 93/105 (88.57%), Query Frame = 3
Query:  174 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 488
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
The following BLAST results are available for this feature:
BLAST of CB290233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B2_SOLLC2.119e-4281.08Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B2_MAIZE2.119e-4283.18Histone H2B.2 OS=Zea mays PE=2 SV=3[more]
H2B5_WHEAT3.614e-4284.62Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]
H2B6_ORYSJ4.721e-4284.76Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_SOLLC4.721e-4294.57Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=... [more]
H2B4_MAIZE6.165e-4284.62Histone H2B.4 OS=Zea mays PE=3 SV=3[more]
H2B3_MAIZE6.165e-4281.31Histone H2B.3 OS=Zea mays PE=3 SV=3[more]
H2B5_MAIZE8.052e-4284.62Histone H2B.5 OS=Zea mays PE=2 SV=3[more]
H2B1_WHEAT1.052e-4184.62Histone H2B.1 OS=Triticum aestivum PE=1 SV=3[more]
H2B8_ORYSJ1.374e-4183.81Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ac01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ac01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290233 ID=CB290233; Name=CB290233; organism=Citrus sinensis; type=EST; length=651bp
GCTAATTTCATTTTCTATCAAATTCAGAAGAATCTTCTCACGCCCTTCAG
TTTTTCTCGTCAAAAGGAACGATGGCGCCGAAAGCCGAGAAGAAGCCAGC
GGAGAAAAAGCCGGTAGCCGAGAAAGCCCCAGCCGAGAAGAGGCCGAAAG
CTGAGAAGAAGATCTCGAAAGATGGCGGCGGCGTCGAGAAAAAGAAGAGG
AAGTTGAAGAAGAACGTGGAGACGTACAAGATCTACATTTTCAAGGTCCT
GAAGCAGGTTCATCCCGATATCGGTATCTCCAGCAAGGCCATGGGCATCA
TGAACAGTTTCATCAACGATATCTTCGAGAAATTGGCCCAAGAGGCGTCT
CGTCTCGCGAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGATCCA
GACCGCCGTGAGATTGGTCTTGCCCGGTGAATTGGCCAAGCACGCCGTGT
CGGAGGGGACCAAGGCCGTTACCAAGTTCACGAGCTCTTGATTTTGTGCA
ATTTTTTTGTCTTGTTAGTGTTCCGTGTTCTTTTGAAATTGTTCCTTTTG
TTACTTTTTAGCCGCCCCGCCTAGCCTAGGGTTTGCTCGTGTTAATGCTT
CTTATGGACAGATTAATGAAAACTTATTGTCTTCTAAAAAAAAAAAAAAA
A
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