CB290252

Overview
NameCB290252
Unique NameCB290252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.032e-27
Identity = 65/181 (35.91%), Postives = 86/181 (47.51%), Query Frame = -1
Query:  298 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 840
            YV NLN  +   E    K LE+++  S    +    FNNAAQ WNH FFW                  I +DFGS              QFGSGWAWL+Y                   D  L ++KT NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:   46 YVQNLNNLLKDKEELQKKDLEEIIEWSSQNSNAA-IFNNAAQIWNHTFFWHSIKPQGGGKPSGKILEQINKDFGSFEEFCEQFKQEAVGQFGSGWAWLIYH------------------DNRLQIIKTANAGTPIAHGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.124e-27
Identity = 73/181 (40.33%), Postives = 89/181 (49.17%), Query Frame = -1
Query:  298 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 840
            YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP+Y+  F   LV+WE V+K L
Sbjct:   35 YVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLV-----------------KSADGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPNYLEHFW-ALVNWEFVAKNL 191          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.124e-27
Identity = 73/181 (40.33%), Postives = 89/181 (49.17%), Query Frame = -1
Query:  298 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 840
            YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP+Y+  F   LV+WE V+K L
Sbjct:   35 YVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLV-----------------KSADGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPNYLEHFW-ALVNWEFVAKNL 191          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.740e-27
Identity = 71/181 (39.23%), Postives = 86/181 (47.51%), Query Frame = -1
Query:  298 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 840
            YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:   35 YVTNLNNLIKGTAF-EGKSLEEIIRSSEGG-----VFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.740e-27
Identity = 71/181 (39.23%), Postives = 86/181 (47.51%), Query Frame = -1
Query:  298 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 840
            YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:   35 YVTNLNNLIKGTAF-EGKSLEEIIRSSEGG-----VFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.740e-27
Identity = 71/181 (39.23%), Postives = 86/181 (47.51%), Query Frame = -1
Query:  298 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 840
            YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:   35 YVTNLNNLIKGTAF-EGKSLEEIIRSSEGG-----VFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.740e-27
Identity = 71/181 (39.23%), Postives = 86/181 (47.51%), Query Frame = -1
Query:  298 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 840
            YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:   35 YVTNLNNLIKGTAF-EGKSLEEIIRSSEGG-----VFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.141e-26
Identity = 70/182 (38.46%), Postives = 93/182 (51.10%), Query Frame = -1
Query:  295 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 840
            YV NLNK I GTE  +  +LE++++ +  KG +   FNNAAQ WNH F+W                  I + FGS            AT FGSGWAWLV                  ++  +L ++ T NA  P+    + LLT DVWEHAYY+D++NRRPDYI  F   LV+W+  S  L+
Sbjct:   35 YVTNLNKLIPGTEF-ESMTLEEIIMKA--KGGI---FNNAAQVWNHTFYWHSMSPNGGGEPKGRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWLV-----------------QDQSGALKIINTSNAGTPMTEGLNALLTCDVWEHAYYIDYRNRRPDYIEAFW-SLVNWDFASSNLK 192          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.663e-26
Identity = 63/182 (34.62%), Postives = 87/182 (47.80%), Query Frame = -1
Query:  298 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 843
            +YV NLN  +   E    K LE ++  S +K   +  FNNA+Q WNH FFW                  I +DFGS              QFGSGW W+VY                   +  L ++KT NA  P+V    P+L  DVWEHAYY+D++N+R DYI +F+  +++W+ V   L
Sbjct:   45 SYVQNLNNLLKDREELQKKDLEGIIKWS-SKNSEVTVFNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVVYN------------------NNKLQIIKTSNADTPIVNLMKPILVCDVWEHAYYIDYRNKRSDYIDIFISHMINWKFVEDNL 207          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.262e-25
Identity = 63/182 (34.62%), Postives = 86/182 (47.25%), Query Frame = -1
Query:  298 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 843
            +YV NLN  I   E    K LE+++  S    ++    NNA+Q WNH FFW                  I +DFGS              QFGSGW W+VY                   D  L ++KT NA  P+V    P+L  DVWEHAYY+D++N+R DYI +F+  +++W+ V   L
Sbjct:   45 SYVQNLNNLIKDREELQKKDLEEIIEWSSQNAEVA-ILNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWVVYH------------------DNKLQIIKTSNAGTPIVNFMKPILACDVWEHAYYIDYRNKRSDYIDIFIRHMINWKFVEDNL 207          
The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODF_RICCN1.032e-2735.91Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_SALTY5.124e-2740.33Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI5.124e-2740.33Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]
SODF_SHIFL8.740e-2739.23Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]
SODF_ECOLI8.740e-2739.23Superoxide dismutase [Fe] OS=Escherichia coli (str... [more]
SODF_ECOL68.740e-2739.23Superoxide dismutase [Fe] OS=Escherichia coli O6 G... [more]
SODF_ECO578.740e-2739.23Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]
SODF_LEGPH1.141e-2638.46Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_RICTY9.663e-2634.62Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODF_RICPR1.262e-2534.62Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTATATTAGTCATCCAAAAACTATTTTCAAAAAGT
AACTCATACATATACTTTGATAGGTTTTATTATACCCTGATTGTTATAAG
AAGAAACCAACACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGT
ACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAAC
ATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTT
CATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCTTTGGCTGATTCCAG
TCTTTTACTTACTGATTCCCATGATACAAGCTTATCCATGAAAACTGATA
TGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCAT
ACATCAATAGTAAGGAGCGGCGAGTAATCCCAGACAAGAGGATTGACAGC
ATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAG
GATTCACCGCATTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGC
CAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTC
AAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAATCAGTCCTAGAAGTT
CACCAGACGGCTTTCCGCCACCACCCGGTTTCATGGATTCCCAGAAGAAG
TCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCTGGAAGCAAGTCACC
CTTGTTGTAAGAAGCAATAACGACATCTTCCAATGACTTTCCATCACCAA
GCTCAGTTCCAACAATTTGCTTGTTGAGGTTATCCACATAAGC
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