CB290252

Overview
NameCB290252
Unique NameCB290252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM3_PLEBO (Superoxide dismutase [Mn] 3 (Fragment) OS=Plectonema boryanum GN=sodA3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14
Identity = 56/191 (29.32%), Postives = 84/191 (43.98%), Query Frame = -1
Query:  289 YVDNLNKQIVGTELGDGKSLEDVVIASYNKG-DLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 840
            YVDNLN     T L D  +L+++ I +  +  + +P        NNA    NH  FW                  I + FG+              +FGSGW WLV                       L +V T N  NP++    P++  DVWEHAYYL +QNRR DY++ + + +V+W  +++R ++A
Sbjct:   65 YVDNLN-----TALKDQPNLQNLSIEAMLRDLNAVPENIRNTIRNNAGGHLNHTIFWQIMSPDGGGQPTGAIAQAINQTFGNFESFRKQFNEAGGDRFGSGWVWLV-----------------RNAQGQLQIVSTANQDNPIMEGNYPIMGNDVWEHAYYLRYQNRRADYLNNWWN-VVNWNEINRRFQAA 232          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_BORBU (Superoxide dismutase [Fe] OS=Borrelia burgdorferi GN=sod PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 49/142 (34.51%), Postives = 62/142 (43.66%), Query Frame = -1
Query:  304 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 729
            NNA    NH  ++                  I   FGS               FGSGWAWLV                    +  L V+  PN  +PL+  Y P+L IDVWEHAYYL +QNRR +Y+  F+ K ++WE VSK
Sbjct:   73 NNAGGYSNHTLYFRTLRPGNKDNLFEKFKDDINAAFGSLDVLKANLKDTAMKIFGSGWAWLVLCP-----------------ESGLKVISMPNQDSPLMNSYKPILGIDVWEHAYYLKYQNRRIEYVDAFL-KALNWEEVSK 196          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_THEAQ (Superoxide dismutase [Mn] OS=Thermus aquaticus GN=sodA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 52/178 (29.21%), Postives = 75/178 (42.13%), Query Frame = -1
Query:  316 AYVDNLNKQIVGTELGDGKSLEDVVI-ASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 843
            AYV NLN  +       G  +E ++   +    D+  A  NN     NH  FW                  I+  FG               +FGSGWAWLV                  +    L V+ T N  NP++  ++P++ IDVWEHAYYL +QNRR DY+    + +++W+
Sbjct:   36 AYVTNLNAALEKYPYLQGAEVETLLRHLTALPADIQAAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFAALKEKLTQAAMGRFGSGWAWLV-----------------KDPFGKLHVISTANQDNPVMGGFAPIVGIDVWEHAYYLKYQNRRADYLQAIWN-VLNWD 195          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_PLEBO (Superoxide dismutase [Mn] 1 OS=Plectonema boryanum GN=sodA1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 48/150 (32.00%), Postives = 71/150 (47.33%), Query Frame = -1
Query:  286 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 729
            NN     NH  FW                  I++ FGS            A +FGSGWAWLV                 S++   L +  T N  NPL+ + +  P+L  DVWEHAYYL +QNRR +Y++ + + +V+W++V++R   A+
Sbjct:  115 NNGGGHVNHTMFWQIMAPKAGGTPTGAVAKAIDQTFGSFDAFKQQFNKAGADRFGSGWAWLV-----------------SDRQGKLSITSTANQDNPLMSNPNAYPILGNDVWEHAYYLKYQNRRAEYLTNWWN-VVNWQAVNQRYAQAQ 246          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STRP1 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M1 GN=sodA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.108e-13
Identity = 47/148 (31.76%), Postives = 65/148 (43.92%), Query Frame = -1
Query:  286 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 729
            NN     NH  FW                  I+  FGS              +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +V+W+ VS+  ++AK
Sbjct:   73 NNGGGHLNHALFWELLSPEKQDVTPDVAQA-IDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IVNWKKVSELYQAAK 201          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.108e-13
Identity = 45/142 (31.69%), Postives = 63/142 (44.37%), Query Frame = -1
Query:  304 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 729
            NN     NH  FW                 + E  FGS             T+FGSGWAWLV                  +K+  L V  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W +V++
Sbjct:   73 NNGGGHLNHALFWELLSPEKTKVTAEVAAAINEA-FGSFDDFKAAFTAAATTRFGSGWAWLVV-----------------DKEGKLEVTSTANQDTPISQGLKPILALDVWEHAYYLNYRNVRPNYIKAFFE-VINWNTVAR 195          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM2_BACAN (Superoxide dismutase [Mn] 2 OS=Bacillus anthracis GN=sodA2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.108e-13
Identity = 52/182 (28.57%), Postives = 80/182 (43.96%), Query Frame = -1
Query:  301 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 840
            YV+NLN  +        KSLE+++  + +  K  +    NN    + H  FW                 +I+  F +             ++FGSG+ WLV                     + L V+ TPN   PL     PLL IDVWEHAYYL +QNRRP++++ +    V+W+ V+++
Sbjct:   36 YVNNLNAALENYSELHNKSLEELLCNLETLPKEIVTAVRNNGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDG------------------EELSVMSTPNQDTPLQEGKIPLLVIDVWEHAYYLKYQNRRPEFVTNWW-HTVNWDRVNEK 198          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STRP8 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M18 GN=sodA PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.447e-13
Identity = 46/148 (31.08%), Postives = 65/148 (43.92%), Query Frame = -1
Query:  286 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 729
            NN     NH  FW                  I+  FGS              +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+  ++AK
Sbjct:   73 NNGGGHLNHALFWELLSPEKQDVTPDVAQA-IDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSELYQAAK 201          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STRP6 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M6 GN=sodA PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.447e-13
Identity = 46/148 (31.08%), Postives = 65/148 (43.92%), Query Frame = -1
Query:  286 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 729
            NN     NH  FW                  I+  FGS              +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+  ++AK
Sbjct:   73 NNGGGHLNHALFWELLSPEKQDITPDVAQA-IDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSELYQAAK 201          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STRP3 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M3 GN=sodA PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.447e-13
Identity = 46/148 (31.08%), Postives = 65/148 (43.92%), Query Frame = -1
Query:  286 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 729
            NN     NH  FW                  I+  FGS              +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+  ++AK
Sbjct:   73 NNGGGHLNHALFWELLSPEKQDVTSDVAQA-IDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSELYQAAK 201          
The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODM3_PLEBO1.002e-1429.32Superoxide dismutase [Mn] 3 (Fragment) OS=Plectone... [more]
SODM_BORBU1.309e-1434.51Superoxide dismutase [Fe] OS=Borrelia burgdorferi ... [more]
SODM_THEAQ6.497e-1429.21Superoxide dismutase [Mn] OS=Thermus aquaticus GN=... [more]
SODM1_PLEBO8.485e-1432.00Superoxide dismutase [Mn] 1 OS=Plectonema boryanum... [more]
SODM_STRP11.108e-1331.76Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRMU1.108e-1331.69Superoxide dismutase [Mn/Fe] OS=Streptococcus muta... [more]
SODM2_BACAN1.108e-1328.57Superoxide dismutase [Mn] 2 OS=Bacillus anthracis ... [more]
SODM_STRP81.447e-1331.08Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP61.447e-1331.08Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP31.447e-1331.08Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTATATTAGTCATCCAAAAACTATTTTCAAAAAGT
AACTCATACATATACTTTGATAGGTTTTATTATACCCTGATTGTTATAAG
AAGAAACCAACACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGT
ACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAAC
ATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTT
CATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCTTTGGCTGATTCCAG
TCTTTTACTTACTGATTCCCATGATACAAGCTTATCCATGAAAACTGATA
TGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCAT
ACATCAATAGTAAGGAGCGGCGAGTAATCCCAGACAAGAGGATTGACAGC
ATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAG
GATTCACCGCATTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGC
CAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTC
AAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAATCAGTCCTAGAAGTT
CACCAGACGGCTTTCCGCCACCACCCGGTTTCATGGATTCCCAGAAGAAG
TCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCTGGAAGCAAGTCACC
CTTGTTGTAAGAAGCAATAACGACATCTTCCAATGACTTTCCATCACCAA
GCTCAGTTCCAACAATTTGCTTGTTGAGGTTATCCACATAAGC
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