CB290252

Overview
NameCB290252
Unique NameCB290252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_MACFA (Superoxide dismutase [Mn], mitochondrial OS=Macaca fascicularis GN=SOD2 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 58/195 (29.74%), Postives = 79/195 (40.51%), Query Frame = -1
Query:  286 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPL--VWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 843
            AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL       PLL IDVWEHAYYL ++N RPDY+    + +++WE+V++R  + K
Sbjct:   57 AYVNNLNVT------------EEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGF----------------NKERGQLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTERYMACK 221          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_PONPY (Superoxide dismutase [Mn], mitochondrial OS=Pongo pygmaeus GN=SOD2 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 58/195 (29.74%), Postives = 79/195 (40.51%), Query Frame = -1
Query:  286 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPL--VWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 843
            AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL       PLL IDVWEHAYYL ++N RPDY+    + +++WE+V++R  + K
Sbjct:   57 AYVNNLNVT------------EEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTERYMACK 221          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_PANTR (Superoxide dismutase [Mn], mitochondrial OS=Pan troglodytes GN=SOD2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 58/195 (29.74%), Postives = 79/195 (40.51%), Query Frame = -1
Query:  286 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPL--VWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 843
            AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL       PLL IDVWEHAYYL ++N RPDY+    + +++WE+V++R  + K
Sbjct:   33 AYVNNLNVT------------EEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTERYMACK 197          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_HYLLA (Superoxide dismutase [Mn], mitochondrial OS=Hylobates lar GN=SOD2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 58/195 (29.74%), Postives = 79/195 (40.51%), Query Frame = -1
Query:  286 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPL--VWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 843
            AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL       PLL IDVWEHAYYL ++N RPDY+    + +++WE+V++R  + K
Sbjct:   33 AYVNNLNVT------------EEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTATSVGVQGSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTERYMACK 197          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_HUMAN (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 58/195 (29.74%), Postives = 79/195 (40.51%), Query Frame = -1
Query:  286 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPL--VWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 843
            AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL       PLL IDVWEHAYYL ++N RPDY+    + +++WE+V++R  + K
Sbjct:   57 AYVNNLNVT------------EEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTERYMACK 221          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_RAT (Superoxide dismutase [Mn], mitochondrial OS=Rattus norvegicus GN=Sod2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 54/183 (29.51%), Postives = 76/183 (41.53%), Query Frame = -1
Query:  301 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPL--VWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 840
            YV+NLN  +   +  +  +  DV      +  L PA   N     NH  FW                  I+RDFGS                GSGW WL +                  K++  L +   +  +PL       PLL IDVWEHAYYL ++N RPDY+    + +++WE+VS+R
Sbjct:   58 YVNNLN--VTEEKYHEALAKGDVT----TQVALQPALKFNGGGHINHSIFWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFN-----------------KEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVSQR 216          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_MACNE (Superoxide dismutase [Mn], mitochondrial OS=Macaca nemestrina GN=SOD2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 57/195 (29.23%), Postives = 77/195 (39.49%), Query Frame = -1
Query:  286 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPL--VWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 843
            AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                  K++  L +      +PL       PLL IDVWEHAYYL ++N RPDY+    + +++WE+V++R  + K
Sbjct:   57 AYVNNLNVT------------EEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKYKEKLTAASVGVQGSGWGWLGFN-----------------KERGQLQIAACLNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTERYMACK 221          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_BOVIN (Superoxide dismutase [Mn], mitochondrial OS=Bos taurus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 56/190 (29.47%), Postives = 75/190 (39.47%), Query Frame = -1
Query:  301 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPL--VWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 843
            AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                  K++  L +   +  +PL       PLL IDVWEHAYYL ++N RPDY+    + +++WE+V+ R
Sbjct:   57 AYVNNLNVA------------EEKYREALEKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPQGELLEAIKRDFGSFAKFKEKLTAVSVGVQGSGWGWLGFN-----------------KEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTAR 216          
The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODM_MACFA1.769e-1129.74Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_PONPY2.311e-1129.74Superoxide dismutase [Mn], mitochondrial OS=Pongo ... [more]
SODM_PANTR2.311e-1129.74Superoxide dismutase [Mn], mitochondrial OS=Pan tr... [more]
SODM_HYLLA2.311e-1129.74Superoxide dismutase [Mn], mitochondrial OS=Hyloba... [more]
SODM_HUMAN2.311e-1129.74Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
SODM_RAT3.018e-1129.51Superoxide dismutase [Mn], mitochondrial OS=Rattus... [more]
SODM_MACNE3.018e-1129.23Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_BOVIN3.018e-1129.47Superoxide dismutase [Mn], mitochondrial OS=Bos ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTATATTAGTCATCCAAAAACTATTTTCAAAAAGT
AACTCATACATATACTTTGATAGGTTTTATTATACCCTGATTGTTATAAG
AAGAAACCAACACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGT
ACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAAC
ATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTT
CATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCTTTGGCTGATTCCAG
TCTTTTACTTACTGATTCCCATGATACAAGCTTATCCATGAAAACTGATA
TGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCAT
ACATCAATAGTAAGGAGCGGCGAGTAATCCCAGACAAGAGGATTGACAGC
ATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAG
GATTCACCGCATTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGC
CAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTC
AAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAATCAGTCCTAGAAGTT
CACCAGACGGCTTTCCGCCACCACCCGGTTTCATGGATTCCCAGAAGAAG
TCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCTGGAAGCAAGTCACC
CTTGTTGTAAGAAGCAATAACGACATCTTCCAATGACTTTCCATCACCAA
GCTCAGTTCCAACAATTTGCTTGTTGAGGTTATCCACATAAGC
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