CB290252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3) HSP 1 Score: 115.161 bits (287), Expect = 4.796e-25 Identity = 72/179 (40.22%), Postives = 88/179 (49.16%), Query Frame = -1 Query: 304 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 840 YV NLN I GTE +GKSLE++V +S G + FNNAAQ WNH F+W I FGS FGSGW WLV K D SL + T A NPL +PLLT DVWEHAYY+D++N RP Y+ F + LV+W+ V+K Sbjct: 35 YVVNLNNLIPGTEF-EGKSLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKA-----------------DGSLALASTIGAGNPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWDFVAK 189
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3) HSP 1 Score: 112.849 bits (281), Expect = 2.380e-24 Identity = 71/186 (38.17%), Postives = 90/186 (48.39%), Query Frame = -1 Query: 289 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL-IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 843 AYV N NK L D SLED+V SY G P FNNA Q +NH FW I+ D G A QFGSGWAWL S K+ L + KTPN NPLV +P+L +DVWEH+YY+D++N RP Y+ F+D L++W+ V + E+A Sbjct: 34 AYVTNGNKLAEEAGLSD-LSLEDIVKKSY--GTNQPLFNNAGQHYNHVHFWKWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFSAAGAGQFGSGWAWL------------------SVKNGKLEISKTPNGENPLVHGATPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYEAA 198
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3) HSP 1 Score: 109.768 bits (273), Expect = 2.015e-23 Identity = 69/182 (37.91%), Postives = 88/182 (48.35%), Query Frame = -1 Query: 295 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 840 YV NLN + GTE +GK+LE++V +S G + FNNAAQ WNH F+W I FGS FGSGW WLV K D SL + T A PL +PLLT DVWEHAYY+D++N RP Y+ F + LV+W V+++ E Sbjct: 35 YVVNLNNLVPGTEF-EGKTLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKA-----------------DGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWAFVAEQFE 192
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 2.632e-23 Identity = 69/182 (37.91%), Postives = 87/182 (47.80%), Query Frame = -1 Query: 295 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 840 YV NLN + GTE +GK+LE++V S G + FNNAAQ WNH F+W I FGS FGSGW WLV K D SL + T A PL +PLLT DVWEHAYY+D++N RP Y+ F + LV+W V+++ E Sbjct: 35 YVVNLNNLVPGTEF-EGKTLEEIVKTS--SGGI---FNNAAQVWNHTFYWNCLAPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKA-----------------DGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWAFVAEQFE 192
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23 Identity = 67/182 (36.81%), Postives = 87/182 (47.80%), Query Frame = -1 Query: 298 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 840 YV LN + GTEL + KSLE+++ S FNNAAQ WNH F+W IE+ FGS FGS W WLV + SL +V T NA P+ + +PLLT+D+WEHAYY+D++N RP Y+ F LV+W+ VSK L Sbjct: 34 YVVKLNGLVEGTELAE-KSLEEIIKTSTGG-----VFNNAAQVWNHTFYWNCLAPNAGGEPTGEVAAAIEKAFGSFAEFKAKFTDSAINNFGSSWTWLV-----------------KNANGSLAIVNTSNAGCPITEEGVTPLLTVDLWEHAYYIDYRNLRPSYMDGFW-ALVNWDFVSKNL 191
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.000e-22 Identity = 66/184 (35.87%), Postives = 90/184 (48.91%), Query Frame = -1 Query: 292 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLES 843 AYV+ LNK I GT + + LE+++ S G + FNNAAQ WNH F+W I++ FGS FGSGWAWLV + + L V+ T NA NP+ PL+T DVWEHAYY+D +N RP Y++ F ++V+W+ V K +S Sbjct: 34 AYVNKLNKLIEGTPF-EKEPLEEIIRKS--DGGI---FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLV-----------------KDNNGKLEVLSTVNARNPMTEGKKPLMTCDVWEHAYYIDTRNDRPKYVNNFW-QVVNWDFVMKNFKS 193
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 3.800e-22 Identity = 68/179 (37.99%), Postives = 82/179 (45.81%), Query Frame = -1 Query: 304 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 840 YV NLN I GTE + SLE++V S FNNAAQ WNH F+W I+ +GS A FGSGW WLV K D +L +V T NA PL LLT DVWEHAYY+D++N RP Y+ F LV+WE +K Sbjct: 35 YVTNLNNLIPGTEF-ENLSLEEIVKKSSGG-----VFNNAAQVWNHTFYWNSLSPNGGGEPSGALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKA-----------------DGTLDIVNTSNAATPLTTADKALLTCDVWEHAYYIDYRNARPKYLENFW-ALVNWEFAAK 189
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.444e-21 Identity = 67/182 (36.81%), Postives = 88/182 (48.35%), Query Frame = -1 Query: 298 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHD-FFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 840 YV+NLN + GTE +GK++E ++AS G + FNNA Q NH +F I+RDFGS FGSGWAWL +KD L + K PN NP+ PLL DVWEHAYYLD+QNRR D+++ + ++ W+ V KRL Sbjct: 35 YVNNLNSLVPGTEY-EGKTVE-AIVASAPDGAI---FNNAGQVLNHTLYFLQFAPKPAKNEPAGKLGEAIKRDFGSFENFKKEFNAASVGLFGSGWAWLSV-----------------DKDGKLHITKEPNGSNPVRAGLKPLLGFDVWEHAYYLDYQNRRADHVNKLWE-IIDWDVVEKRL 193
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21 Identity = 65/176 (36.93%), Postives = 82/176 (46.59%), Query Frame = -1 Query: 316 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 840 YV LN I GT+ + KSLE++V +S FNNAAQ WNH F+W I +GS FGS W WLV D SL +V T NA PL D +P+LT+D+WEHAYY+D++N RPDY+ F LV+WE Sbjct: 34 YVVKLNGLIPGTKF-ENKSLEEIVCSSDGG-----VFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLV-----------------KLADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKGFW-SLVNWE 185
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21 Identity = 69/191 (36.13%), Postives = 89/191 (46.60%), Query Frame = -1 Query: 286 YVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-----NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840 Y+ NLN + G EL D KS+E++V N ++ A NN NH FFW IE FGS AT+FGSGWAWLV + L V TPN +PL +P++ +DVWEHAYYL++QNRRPDYI F + +V W + KR + AK Sbjct: 51 YITNLNAALEGHAELAD-KSVEELVA---NLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVN------------------NGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWN-VVDWNAAEKRYQEAK 218 The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bpback to top |