CB290252

Overview
NameCB290252
Unique NameCB290252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 69/191 (36.13%), Postives = 89/191 (46.60%), Query Frame = -1
Query:  286 YVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-----NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            Y+ NLN  + G  EL D KS+E++V    N  ++  A      NN     NH FFW                  IE  FGS            AT+FGSGWAWLV                    +  L V  TPN  +PL    +P++ +DVWEHAYYL++QNRRPDYI  F + +V W +  KR + AK
Sbjct:   36 YITNLNAALEGHAELAD-KSVEELVA---NLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVN------------------NGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWN-VVDWNAAEKRYQEAK 203          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 4.201e-21
Identity = 73/200 (36.50%), Postives = 94/200 (47.00%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV-----IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXG----LIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YVDN NK + GTE  D   +E ++     + +  KG L    NNA    NH  FW                G     I   FGS             T+FGSGWAWLV K                  D  L VV T N  NPL+ +       +P+L +DVWEHAYYL++QNRRPDY++ F + +V+W+ VSKR  +AK
Sbjct:   35 YVDNANKALEGTEFAD-LPVEQLIQQLDRVPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVK------------------DGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKRYAAAK 211          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.166e-21
Identity = 66/186 (35.48%), Postives = 88/186 (47.31%), Query Frame = -1
Query:  289 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 840
            YV  LN  I GT+L + KS+E++V  + S          NN     NH  FW                  I+ ++GS            A QFGSGWAWLV                  +KD  L +V TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+W  V +  E+A
Sbjct:   35 YVTKLNAAIEGTDL-ENKSIEEIVANLDSVPSDIQTAVRNNGGGHLNHSLFWQLLTPNSEEKGTVIDK--IKEEWGSLDKFKDEFAKKAAGQFGSGWAWLVV-----------------DKDGKLEIVSTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYIDAFWN-VVNWNKVDELYEAA 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 66/185 (35.68%), Postives = 88/185 (47.57%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV+NLN  I GT+  +  SL D++  S         FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W  Y              L ++K   + +++T NA  P+     PLL +DVWEHAYY+D +N RP Y+  F    ++W  VS+  E AK
Sbjct:   34 YVNNLNNLIKGTDF-EKSSLFDILTKSSGG-----VFNNAAQIYNHDFYWDCLSPKATALSDELKGAL-EKDFGSLEKFKEDFIKSATTLFGSGWNWAAYN-------------LDTQK---IEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH-INWHFVSQCYEWAK 194          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.597e-20
Identity = 68/191 (35.60%), Postives = 88/191 (46.07%), Query Frame = -1
Query:  289 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL-------IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 840
            YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY                + K++ L  V T NA  P+  D  PLL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E A
Sbjct:   34 YVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYEWA 201          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.597e-20
Identity = 68/191 (35.60%), Postives = 88/191 (46.07%), Query Frame = -1
Query:  289 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL-------IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 840
            YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY                + K++ L  V T NA  P+  D  PLL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E A
Sbjct:   34 YVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYEWA 201          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.085e-20
Identity = 64/187 (34.22%), Postives = 84/187 (44.92%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + G      KS+E +V  + +  +       NN     NH  FW                  I  +FGS            A +FGSGWAWLV                    D  L +  TPN   PL+   +P+L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V+KR   AK
Sbjct:   35 YVTKLNAALEGHSALAEKSIEALVSDLDAVPENIRTAVRNNGGGHANHTLFWQILSPNGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLVVN------------------DGKLEITSTPNQDTPLMEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVAKRYNEAK 202          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.723e-20
Identity = 65/187 (34.76%), Postives = 89/187 (47.59%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    + +L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:   35 YVTKLNAAVEGTDL-ESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDAFKEEFADKAAARFGSGWAWLVVN------------------NGNLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.723e-20
Identity = 62/188 (32.98%), Postives = 87/188 (46.28%), Query Frame = -1
Query:  283 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 840
            YV NLN  + G      KSLE+++  + +  +       NN     NH  FW                  I + FGS            A +FGSGWAWLV                    +  L +  TPN  +P++   +P+L +DVWEHAYYL +QNRRP+YI+ F + +V+W+ V+KR   AKA
Sbjct:   35 YVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELAEAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVN------------------NGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPEYIAAFWN-IVNWDEVAKRYSEAKA 203          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.557e-20
Identity = 62/188 (32.98%), Postives = 87/188 (46.28%), Query Frame = -1
Query:  283 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 840
            YV NLN  + G      KSLE+++  + +  +       NN     NH  FW                  I + FGS            A +FGSGWAWLV                    +  L +  TPN  +P++   +P+L +DVWEHAYYL +QNRRP+YI+ F + +V+W+ V+KR   AKA
Sbjct:   35 YVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELADAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVN------------------NGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPEYIAAFWN-VVNWDEVAKRYSEAKA 203          
The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODM1_BACAN3.217e-2136.13Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODM_DEIRA4.201e-2136.50Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_STACA7.166e-2135.48Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODF_HELPY1.222e-2035.68Superoxide dismutase [Fe] OS=Helicobacter pylori G... [more]
SODF_CAMJJ1.597e-2035.60Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE1.597e-2035.60Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODM_BACHD2.085e-2034.22Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODM_STAS12.723e-2034.76Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]
SODM_BACCA2.723e-2032.98Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM_BACST3.557e-2032.98Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTATATTAGTCATCCAAAAACTATTTTCAAAAAGT
AACTCATACATATACTTTGATAGGTTTTATTATACCCTGATTGTTATAAG
AAGAAACCAACACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGT
ACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAAC
ATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTT
CATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCTTTGGCTGATTCCAG
TCTTTTACTTACTGATTCCCATGATACAAGCTTATCCATGAAAACTGATA
TGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCAT
ACATCAATAGTAAGGAGCGGCGAGTAATCCCAGACAAGAGGATTGACAGC
ATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAG
GATTCACCGCATTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGC
CAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTC
AAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAATCAGTCCTAGAAGTT
CACCAGACGGCTTTCCGCCACCACCCGGTTTCATGGATTCCCAGAAGAAG
TCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCTGGAAGCAAGTCACC
CTTGTTGTAAGAAGCAATAACGACATCTTCCAATGACTTTCCATCACCAA
GCTCAGTTCCAACAATTTGCTTGTTGAGGTTATCCACATAAGC
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