CB290252

Overview
NameCB290252
Unique NameCB290252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.645e-20
Identity = 64/187 (34.22%), Postives = 89/187 (47.59%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    + +L +V TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:   35 YVTKLNAAVEGTDL-ESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDAFKEEFADKAAARFGSGWAWLVVN------------------NGNLEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.645e-20
Identity = 66/185 (35.68%), Postives = 87/185 (47.03%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV+NLN  I GT+    KS    ++   + G     FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W  Y              L ++K   + +++T NA  P+     PLL +DVWEHAYY+D +N RP Y+  F    V+W  VS+  E AK
Sbjct:   34 YVNNLNNLIKGTDFE--KSSLFAILTKSSGG----VFNNAAQIYNHDFYWDCLSPKATALSDELKEAL-EKDFGSLEKFKEDFIKSATTLFGSGWNWAAYN-------------LDTQK---IEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH-VNWHFVSQCYEWAK 194          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 61/188 (32.45%), Postives = 87/188 (46.28%), Query Frame = -1
Query:  283 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLL--PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 840
            Y++N+N  + GTE  D   +E++V    +  + L  P  NN     NH  FW                  I++D G              ++FGSGWAWL                     DK ++V  T N  +PL    +P+L +DVWEHAYYL +QNRRPDYI  F + +V+W+ V +R  +A A
Sbjct:   35 YINNVNAALEGTEYAD-LPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTP-----------------DKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPDYIGAFYN-VVNWDEVERRYHAAIA 203          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 61/188 (32.45%), Postives = 87/188 (46.28%), Query Frame = -1
Query:  283 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLL--PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 840
            Y++N+N  + GTE  D   +E++V    +  + L  P  NN     NH  FW                  I++D G              ++FGSGWAWL                     DK ++V  T N  +PL    +P+L +DVWEHAYYL +QNRRPDYI  F + +V+W+ V +R  +A A
Sbjct:   35 YINNVNAALEGTEYAD-LPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTP-----------------DKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPDYIGAFYN-VVNWDEVERRYHAAIA 203          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 64/187 (34.22%), Postives = 85/187 (45.45%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV NLNK + G      KS+E++V  + S  +       NN     NH  FW                  I   FGS            A +FGSGWAWLV                    +  L +  TPN  +PL    +P+L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V++    AK
Sbjct:   35 YVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVN------------------NGKLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVARLYSEAK 202          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STAEP (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis GN=sodA PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.923e-20
Identity = 65/187 (34.76%), Postives = 87/187 (46.52%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:   35 YVTKLNAVVEGTDL-EAKSIEEIVANLDSVPSDIQTAVRNNGGGHLNHSLFWELLTPNSEEKGEVVEK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 7.923e-20
Identity = 63/180 (35.00%), Postives = 83/180 (46.11%), Query Frame = -1
Query:  301 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 840
            YVDNLNK I+GTE  +   L  +V  S  +G +   FNNA Q  NH+ ++                  I++ FGS             T FGSGW WL                  S+ +  L + K PNA NP+    +PLL  DVWEHAYYL +QNRR D++      +V W+ V  R
Sbjct:   35 YVDNLNKLIIGTEF-ENADLNTIVQKS--EGGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLA-----------------SDANGKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYYLTYQNRRADHLKDLW-SIVDWDIVESR 190          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STAHJ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sodA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.035e-19
Identity = 64/187 (34.22%), Postives = 87/187 (46.52%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   + K
Sbjct:   35 YVTKLNSAVEGTDL-ESKSIEEIVANLDSVPEDIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNATK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.352e-19
Identity = 64/184 (34.78%), Postives = 89/184 (48.37%), Query Frame = -1
Query:  292 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLES 840
            YV+ LN  I GT L +  ++E++++     G     FNNAAQ WNH F+W                  IE  FGS            A  FGSGW WLV K                  D +  +V+T +A +PL  +   PLL  DVWEHAYY+D++N R  YI+ + + LV+W+  +K LE+
Sbjct:   35 YVNKLNSLIKGTPL-ESCTIEELIL-----GQTGAVFNNAAQIWNHTFYWNSMGPNCGGEPTGPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLKD-----------------DGTADIVQTHDAGSPLKENLGRPLLCCDVWEHAYYIDYKNDRLSYINSWWN-LVNWDFANKNLEA 194          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.305e-19
Identity = 65/191 (34.03%), Postives = 86/191 (45.03%), Query Frame = -1
Query:  289 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL-------IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 840
            YV NLN  I  TE    K L  ++ +S         FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY                + K++ L  V T NA  P+  D  PLL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E A
Sbjct:   34 YVTNLNNLIKYTEFAS-KDLVSIIKSSSGG-----VFNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYEWA 201          
The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODM_STAXY4.645e-2034.22Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]
SODF_HELPJ4.645e-2035.68Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODM_XANCP6.067e-2032.45Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_XANC86.067e-2032.45Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_BACSU6.067e-2034.22Superoxide dismutase [Mn] OS=Bacillus subtilis GN=... [more]
SODM_STAEP7.923e-2034.76Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODF_PORGI7.923e-2035.00Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODM_STAHJ1.035e-1934.22Superoxide dismutase [Mn/Fe] OS=Staphylococcus hae... [more]
SODF_BABBO1.352e-1934.78Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB... [more]
SODF_CAMCO2.305e-1934.03Superoxide dismutase [Fe] OS=Campylobacter coli GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTATATTAGTCATCCAAAAACTATTTTCAAAAAGT
AACTCATACATATACTTTGATAGGTTTTATTATACCCTGATTGTTATAAG
AAGAAACCAACACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGT
ACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAAC
ATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTT
CATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCTTTGGCTGATTCCAG
TCTTTTACTTACTGATTCCCATGATACAAGCTTATCCATGAAAACTGATA
TGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCAT
ACATCAATAGTAAGGAGCGGCGAGTAATCCCAGACAAGAGGATTGACAGC
ATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAG
GATTCACCGCATTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGC
CAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTC
AAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAATCAGTCCTAGAAGTT
CACCAGACGGCTTTCCGCCACCACCCGGTTTCATGGATTCCCAGAAGAAG
TCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCTGGAAGCAAGTCACC
CTTGTTGTAAGAAGCAATAACGACATCTTCCAATGACTTTCCATCACCAA
GCTCAGTTCCAACAATTTGCTTGTTGAGGTTATCCACATAAGC
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