CB290252

Overview
NameCB290252
Unique NameCB290252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.011e-19
Identity = 62/187 (33.16%), Postives = 87/187 (46.52%), Query Frame = -1 
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYI+ F + +V+WE V++   + K
Sbjct:   35 YVTKLNSAVEGTDL-EAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYINAFWN-VVNWEKVNELYNATK 199
[Close]
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.011e-19
Identity = 62/187 (33.16%), Postives = 87/187 (46.52%), Query Frame = -1 
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYI+ F + +V+WE V++   + K
Sbjct:   35 YVTKLNSAVEGTDL-EAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYINAFWN-VVNWEKVNELYNATK 199
[Close]
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = -1 
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:   35 YVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = -1 
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:   35 YVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = -1 
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:   35 YVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = -1 
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:   35 YVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = -1 
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:   35 YVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = -1 
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:   35 YVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = -1 
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:   35 YVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = -1 
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:   35 YVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODM_STAES3.011e-1933.16Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ3.011e-1933.16Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM1_STAAW5.136e-1933.69Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS5.136e-1933.69Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAR5.136e-1933.69Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAN5.136e-1933.69Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAM5.136e-1933.69Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAC5.136e-1933.69Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAB5.136e-1933.69Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAA85.136e-1933.69Superoxide dismutase [Mn] 1 OS=Staphylococcus aure... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ad02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTATATTAGTCATCCAAAAACTATTTTCAAAAAGT
AACTCATACATATACTTTGATAGGTTTTATTATACCCTGATTGTTATAAG
AAGAAACCAACACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGT
ACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAAC
ATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTT
CATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCTTTGGCTGATTCCAG
TCTTTTACTTACTGATTCCCATGATACAAGCTTATCCATGAAAACTGATA
TGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCAT
ACATCAATAGTAAGGAGCGGCGAGTAATCCCAGACAAGAGGATTGACAGC
ATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAG
GATTCACCGCATTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGC
CAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTC
AAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAATCAGTCCTAGAAGTT
CACCAGACGGCTTTCCGCCACCACCCGGTTTCATGGATTCCCAGAAGAAG
TCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCTGGAAGCAAGTCACC
CTTGTTGTAAGAAGCAATAACGACATCTTCCAATGACTTTCCATCACCAA
GCTCAGTTCCAACAATTTGCTTGTTGAGGTTATCCACATAAGC
back to top