CB290252

Overview
NameCB290252
Unique NameCB290252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:   35 YVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_METJ (Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=sodB PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 62/192 (32.29%), Postives = 84/192 (43.75%), Query Frame = -1
Query:  283 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLP------AFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 840
            Y++N+N  + GT   +     + V A   K D LP        NN     NH  FW                  I+ D G              T+FGSGWAWL                     +K L+V  T N  +PL    +P+L +DVWEHAYYL +QNRRP+YI  F + +V+W+ VS+R + A A
Sbjct:   34 YINNVNAALEGTSFAN-----EPVEALLQKLDSLPENLRGPVRNNGGGHANHSLFWKVLTPNGGGEPKGALADAIKSDIGGLDTFKEAFTKAALTRFGSGWAWLSVTP-----------------EKKLVVESTGNQDSPLSTGNTPILGLDVWEHAYYLKYQNRRPEYIGAFFN-VVNWDEVSRRYQEALA 202          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 72/199 (36.18%), Postives = 91/199 (45.73%), Query Frame = -1
Query:  283 AYVDNLNKQIVG-----TELGDGKSLEDV-VIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVW------DYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 843
            AYV+N N  + G      E+  G  + ++  I +  +G L    NNA    NH  FW                  IERDFGS            AT+FGSGWAWLV                    +  L VV T N  NPL+       +  PLL +DVWEHAYYL FQNRRPDYI  F + +V+W+ V++R E   A
Sbjct:   34 AYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALR---NNAGGHTNHSLFWKSLKKGTTLQGALKDA--IERDFGSVDAFKAEFEKAAATRFGSGWAWLVLTA-----------------EGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDFVAERFEQKTA 209          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 61/187 (32.62%), Postives = 85/187 (45.45%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN+ + G      KS E++V  + S  +       N+     NH  FW                  IE +FG+            A +FGSGWAWLV                    D  L +V T N  +PL    +P+L +DVWEHAYYL FQNRRP+YI  F + +++W+  +KR ++AK
Sbjct:   35 YVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVN------------------DGKLEIVSTANQDSPLSDGKTPVLGLDVWEHAYYLKFQNRRPEYIETFWN-VINWDEANKRFDAAK 202          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM2_STAAW (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MW2) GN=sodM PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    +P+L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  ++AK
Sbjct:   35 YVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM2_STAAS (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MSSA476) GN=sodM PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    +P+L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  ++AK
Sbjct:   35 YVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM2_STAAR (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MRSA252) GN=sodM PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    +P+L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  ++AK
Sbjct:   35 YVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM2_STAAN (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain N315) GN=sodM PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    +P+L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  ++AK
Sbjct:   35 YVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM2_STAAM (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodM PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    +P+L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  ++AK
Sbjct:   35 YVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM2_STAAC (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain COL) GN=sodM PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    +P+L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  ++AK
Sbjct:   35 YVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODM1_STAA35.136e-1933.69Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODF_METJ5.136e-1932.29Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=... [more]
SODM_HAEIN6.708e-1936.18Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_LISMO1.144e-1832.62Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODM2_STAAW1.144e-1832.09Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAS1.144e-1832.09Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAR1.144e-1832.09Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAN1.144e-1832.09Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAM1.144e-1832.09Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAC1.144e-1832.09Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTATATTAGTCATCCAAAAACTATTTTCAAAAAGT
AACTCATACATATACTTTGATAGGTTTTATTATACCCTGATTGTTATAAG
AAGAAACCAACACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGT
ACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAAC
ATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTT
CATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCTTTGGCTGATTCCAG
TCTTTTACTTACTGATTCCCATGATACAAGCTTATCCATGAAAACTGATA
TGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCAT
ACATCAATAGTAAGGAGCGGCGAGTAATCCCAGACAAGAGGATTGACAGC
ATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAG
GATTCACCGCATTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGC
CAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTC
AAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAATCAGTCCTAGAAGTT
CACCAGACGGCTTTCCGCCACCACCCGGTTTCATGGATTCCCAGAAGAAG
TCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCTGGAAGCAAGTCACC
CTTGTTGTAAGAAGCAATAACGACATCTTCCAATGACTTTCCATCACCAA
GCTCAGTTCCAACAATTTGCTTGTTGAGGTTATCCACATAAGC
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