CB290252

Overview
NameCB290252
Unique NameCB290252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM2_STAA8 (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodM PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    +P+L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  ++AK
Sbjct:   35 YVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM2_STAA3 (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain USA300) GN=sodM PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    +P+L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  ++AK
Sbjct:   35 YVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PLAVI (Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 59/185 (31.89%), Postives = 84/185 (45.41%), Query Frame = -1
Query:  289 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 840
            YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL                     +  L++++T +A NP+  +   P+LT D+WEHAYY+D++N R  Y+  + + LV+W   ++ L+ A
Sbjct:   35 YVNKLNTLIKDTPFAE-KSLLDIVKESSGA-----IFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALN-----------------NNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWN-LVNWNFANENLKKA 195          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PLAFX (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3) GN=SODB PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 59/185 (31.89%), Postives = 84/185 (45.41%), Query Frame = -1
Query:  289 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 840
            YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL                     +  L++++T +A NP+  +   P+LT D+WEHAYY+D++N R  Y+  + + LV+W   ++ L+ A
Sbjct:   35 YVNKLNTLIKDTPFAE-KSLLDIVKESSGA-----IFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALN-----------------NNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWN-LVNWNFANENLKKA 195          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PLAFA (Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 59/185 (31.89%), Postives = 84/185 (45.41%), Query Frame = -1
Query:  289 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 840
            YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL                     +  L++++T +A NP+  +   P+LT D+WEHAYY+D++N R  Y+  + + LV+W   ++ L+ A
Sbjct:   35 YVNKLNTLIKDTPFAE-KSLLDIVKESSGA-----IFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALN-----------------NNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWN-LVNWNFANENLKKA 195          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PLAF7 (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7) GN=SODB PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 59/185 (31.89%), Postives = 84/185 (45.41%), Query Frame = -1
Query:  289 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 840
            YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL                     +  L++++T +A NP+  +   P+LT D+WEHAYY+D++N R  Y+  + + LV+W   ++ L+ A
Sbjct:   35 YVNKLNTLIKDTPFAE-KSLLDIVKESSGA-----IFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALN-----------------NNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWN-LVNWNFANENLKKA 195          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_ENTHI (Superoxide dismutase [Fe] OS=Entamoeba histolytica GN=SODB PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.549e-18
Identity = 60/181 (33.15%), Postives = 84/181 (46.41%), Query Frame = -1
Query:  298 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 840
            YV+ LN  + GTE  + K+LE+++     +      +NNAAQAWNH F+W                 L    FG                FGSGW WLV                  E D  L ++ T +AVNP+     PLLT DVWEHAYY+D +N R  Y+  + + +V+W+ V ++L
Sbjct:   35 YVNKLNGLVKGTEQ-EHKTLEELIKQKPTQA----IYNNAAQAWNHAFYWKCMCGCGVKPSEQLIAKLTAA-FGGLEEFKKKFTEKAVGHFGSGWCWLV------------------EHDGKLEIIDTHDAVNPMTNGMKPLLTCDVWEHAYYIDTRNNRAAYLEHWWN-VVNWKFVEEQL 190          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM2_STAAB (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodM PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.348e-18
Identity = 59/187 (31.55%), Postives = 86/187 (45.99%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV                    +  L +V TPN  NPL    +P+L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  ++AK
Sbjct:   35 YVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------NGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM2_PLEBO (Superoxide dismutase [Mn] 2 OS=Plectonema boryanum GN=sodA2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.348e-18
Identity = 56/187 (29.95%), Postives = 85/187 (45.45%), Query Frame = -1
Query:  289 AYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 843
            AYV+NLN  I         S+ED+V  +    +       NNA    NH  FW                  I   FGS              +FGSGW WLV                   +   L ++ TPN  +PL+  ++P++  DVWEHAYYL +QNRRP+Y++ + + +++WE +++R ++A
Sbjct:   34 AYVNNLNAAIEKYSDLQSMSVEDLVTHLDRVPEDVRTTVRNNAGGHVNHTMFWEIMGANGSGAPTGAISEAINNSFGSFDAFKQQFNDAGTKRFGSGWVWLV-----------------RSQQGDLQILSTPNQDSPLIEGHTPIMGNDVWEHAYYLKYQNRRPEYLNAWWN-VLNWEEINRRFDAA 202          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 59/154 (38.31%), Postives = 71/154 (46.10%), Query Frame = -1
Query:  286 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 729
            NNA    NH  FW                  IERDFGS            AT+FGSGWAWLV K                  D  L VV T N  +PL+ +        P++ +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R   AK
Sbjct:   74 NNAGGHANHSLFWKGLKLGTTLTGDLKAA--IERDFGSVDSFKEKFEAAAATRFGSGWAWLVLKD-----------------DGKLAVVSTANQDSPLMGEAVSGASGFPIVGLDVWEHAYYLKFQNRRPDYIKAFWN-VVNWDEAAARFAQAK 207          
The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODM2_STAA81.144e-1832.09Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAA31.144e-1832.09Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODF_PLAVI1.144e-1831.89Superoxide dismutase [Fe] OS=Plasmodium vivax GN=S... [more]
SODF_PLAFX1.144e-1831.89Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAFA1.144e-1831.89Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAF71.144e-1831.89Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_ENTHI2.549e-1833.15Superoxide dismutase [Fe] OS=Entamoeba histolytica... [more]
SODM2_STAAB4.348e-1831.55Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_PLEBO4.348e-1829.95Superoxide dismutase [Mn] 2 OS=Plectonema boryanum... [more]
SODM_YEREN5.678e-1838.31Superoxide dismutase [Mn] OS=Yersinia enterocoliti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTATATTAGTCATCCAAAAACTATTTTCAAAAAGT
AACTCATACATATACTTTGATAGGTTTTATTATACCCTGATTGTTATAAG
AAGAAACCAACACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGT
ACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAAC
ATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTT
CATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCTTTGGCTGATTCCAG
TCTTTTACTTACTGATTCCCATGATACAAGCTTATCCATGAAAACTGATA
TGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCAT
ACATCAATAGTAAGGAGCGGCGAGTAATCCCAGACAAGAGGATTGACAGC
ATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAG
GATTCACCGCATTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGC
CAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTC
AAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAATCAGTCCTAGAAGTT
CACCAGACGGCTTTCCGCCACCACCCGGTTTCATGGATTCCCAGAAGAAG
TCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCTGGAAGCAAGTCACC
CTTGTTGTAAGAAGCAATAACGACATCTTCCAATGACTTTCCATCACCAA
GCTCAGTTCCAACAATTTGCTTGTTGAGGTTATCCACATAAGC
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