CB290252

Overview
NameCB290252
Unique NameCB290252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 71/193 (36.79%), Postives = 86/193 (44.56%), Query Frame = -1
Query:  289 AYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL-IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS-----PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 843
            AYVDNLN QI      D   L  +   I+ YN        NN    +NH FFW                   I +DFGS            + +FGSGWAWL+                P+ K   L V  TPN  NPL+ D S     PLL +DVWEHAYYL +QNRR DYI  F   +V+W  V++R   A
Sbjct:   56 AYVDNLNAQIKTYPELDKTDLIQLQKQISKYNTA----VRNNGGGHFNHTFFWESLAATNKTGQPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLIVT--------------PNGK---LAVTSTPNQDNPLM-DLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFW-SVVNWNKVNERYNEA 225          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.265e-17
Identity = 69/202 (34.16%), Postives = 90/202 (44.55%), Query Frame = -1
Query:  283 YVDNLNKQIVGTELGDGKSLEDVVIASYNKG---DLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL-IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 840
            YV+NLN       L     L+D+ +   NK    D LP        NN    +NH FFW                   IE  FGS            A +FGSGWAWL  K                  D SL +  TPN  NPL+          PLL +DVWEHAYYL +QNRRP+YI+ + + +V+WE V++  ++A+A
Sbjct:   35 YVNNLN-----AALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWLSVKP-----------------DGSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAWWN-VVNWEQVAENYKAAQA 213          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.265e-17
Identity = 58/185 (31.35%), Postives = 83/185 (44.86%), Query Frame = -1
Query:  289 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS-PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 840
            YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL                     +  L++++T +A NP+  +   P+LT D+WEHAY +D++N R  Y+  + + LV+W   ++ L+ A
Sbjct:   35 YVNKLNTLIKDTPFAE-KSLLDIVKESSGA-----IFNNAAQIWNHTFYWDSMGPDCGGEPHGGIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALN-----------------NNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYCIDYRNDRASYVKAWWN-LVNWNFANENLKKA 195          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 60/187 (32.09%), Postives = 85/187 (45.45%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN+ + G      K +E++V  + S  +       N+     NH  FW                  IE +FG+            A +FGSGWAWLV                    +  L +V T N  +PL    +P+L +DVWEHAYYL FQNRRP+YI  F + +V+W+  +KR ++AK
Sbjct:   35 YVTKLNEAVSGHPELAEKPVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLVVN------------------NGKLEIVSTANQDSPLSDGKTPVLGLDVWEHAYYLKFQNRRPEYIDTFWN-VVNWDEANKRFDAAK 202          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 65/189 (34.39%), Postives = 89/189 (47.09%), Query Frame = -1
Query:  286 YVDNLNKQIVG-TELGDGKSLEDVVIASYNK--GDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV NLN  I    ELG+ KS+E++ I+  N    D+  A  NN     NH FFW                  I+  FGS              +FGSGWAWLV                    +  L +  TPN  +PL+   +P+L +DVWEHAYYL ++N RPDYI  F + +V+W+ V++   +AK
Sbjct:   35 YVTNLNAAIEKHPELGE-KSVENL-ISDMNAIPEDIRTAVRNNGGGHANHTFFWEIMAPNAGGQPTGAIKEAIDETFGSFDEMKAAFKTAATGRFGSGWAWLVVN------------------NGKLEITSTPNQDSPLMDGQTPVLGLDVWEHAYYLKYKNVRPDYIEAFWN-VVNWDKVNELFAAAK 202          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.818e-17
Identity = 69/197 (35.03%), Postives = 88/197 (44.67%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV+N N  +          +E+++     K D +PA       NNA    NH  FW                  IERDFGS            AT+FGSGWAWLV K                  DK L VV T N  +PL+ +        P+L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R  + K
Sbjct:   35 YVNNANAALENLPEFASLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.818e-17
Identity = 58/188 (30.85%), Postives = 82/188 (43.62%), Query Frame = -1
Query:  283 YVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 840
            YV+NLN  + GT   + + +E ++  +A   +    P  NN     NH  FW                  I+   G              T+FGSGWAWL                       SLLV  + N  +PL+   +P+L +DVWEHAYYL +QNRRP+YI  F + ++ W  V++R   A A
Sbjct:   35 YVNNLNAALEGTPYAE-QPVESLLRQLAGLPEKLRTPVVNNGGGHANHSLFWTVMSPQGGGRPDGDLGRAIDEQLGGFEAFKDAFTKAALTRFGSGWAWLSVTPQG-----------------SLLVESSGNQDSPLMNGNTPILGLDVWEHAYYLKYQNRRPEYIGAFYN-VIDWREVARRYAQALA 203          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.681e-17
Identity = 69/197 (35.03%), Postives = 88/197 (44.67%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS            A++FGSGWAWLV K                  DK L VV T N  +PL+ +        P+L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R  + K
Sbjct:   35 YVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.681e-17
Identity = 69/197 (35.03%), Postives = 88/197 (44.67%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV+N N  +          +E+++     K D +PA       NNA    NH  FW                  IERDFGS            AT+FGSGWAWLV K                  DK L VV T N  +PL+ +        P+L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R  + K
Sbjct:   35 YVNNANAALENLPEFADLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.681e-17
Identity = 69/197 (35.03%), Postives = 88/197 (44.67%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS            A++FGSGWAWLV K                  DK L VV T N  +PL+ +        P+L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R  + K
Sbjct:   35 YVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODM_ACIAD7.416e-1836.79Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODM_CHLRE1.265e-1734.16Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODF_PLAMA1.265e-1731.35Superoxide dismutase [Fe] OS=Plasmodium malariae G... [more]
SODM_LISIN2.158e-1732.09Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]
SODM_ENTFA2.158e-1734.39Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODM_SALTY2.818e-1735.03Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_PSEAE2.818e-1730.85Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]
SODM_SHIFL3.681e-1735.03Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_SALTI3.681e-1735.03Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]
SODM_ECO573.681e-1735.03Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTATATTAGTCATCCAAAAACTATTTTCAAAAAGT
AACTCATACATATACTTTGATAGGTTTTATTATACCCTGATTGTTATAAG
AAGAAACCAACACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGT
ACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAAC
ATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTT
CATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCTTTGGCTGATTCCAG
TCTTTTACTTACTGATTCCCATGATACAAGCTTATCCATGAAAACTGATA
TGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCAT
ACATCAATAGTAAGGAGCGGCGAGTAATCCCAGACAAGAGGATTGACAGC
ATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAG
GATTCACCGCATTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGC
CAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTC
AAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAATCAGTCCTAGAAGTT
CACCAGACGGCTTTCCGCCACCACCCGGTTTCATGGATTCCCAGAAGAAG
TCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCTGGAAGCAAGTCACC
CTTGTTGTAAGAAGCAATAACGACATCTTCCAATGACTTTCCATCACCAA
GCTCAGTTCCAACAATTTGCTTGTTGAGGTTATCCACATAAGC
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