CB290252

Overview
NameCB290252
Unique NameCB290252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.278e-17
Identity = 68/197 (34.52%), Postives = 88/197 (44.67%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS            A++FGSGWAWLV K                  DK L VV T N  +PL+ +        P++ +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R  + K
Sbjct:   35 YVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.199e-17
Identity = 67/191 (35.08%), Postives = 86/191 (45.03%), Query Frame = -1
Query:  295 AYVDNLNKQIVGT-ELGDGKSLEDVVIASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVW------DYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 843
            AYV+N N  +    EL  G   + +   +    D L A  NN     NH  FW                  I RDFGS            AT+FGSGWAWLV                  +++  L VV T N  +P++       +  PLL +DVWEHAYYL FQNRRPDYI  F   +V+W+ V++R E
Sbjct:   34 AYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLTAIRNNVGGHLNHSLFWKSLKKGTTLQGALKDA--IVRDFGSVEAFQAEFEKAAATRFGSGWAWLVL-----------------QENGKLAVVSTANQDSPVMGKAIAGCEGYPLLGLDVWEHAYYLKFQNRRPDYIKEFW-HVVNWDFVAERFE 204          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.071e-16
Identity = 60/187 (32.09%), Postives = 82/187 (43.85%), Query Frame = -1
Query:  286 YVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW-NHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV  LN+ + G  EL      E V        ++  A  N      NH  FW                  IE +FG+            A +FGSGWAWLV                    +  L +V T N  +PL    +P+L +DVWEHAYYL FQNRRP+YI  F + +++W+  +KR ++AK
Sbjct:   35 YVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSPNGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVN------------------NGKLEIVSTANQDSPLSEGKTPVLGLDVWEHAYYLKFQNRRPEYIDTFWN-VINWDERNKRFDAAK 202          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 63/190 (33.16%), Postives = 84/190 (44.21%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVVI-ASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL---IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV+NLN  I      D  SLE+++   S    D+  A  NN     NH  FW                 +   I ++FGS              +FGSGWAWLV                  ++   L VV T N  NP+    +P+L +DVWEHAYYL + N RPDYI  F + LV+W+ V++    AK
Sbjct:   35 YVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVV-----------------DEAGKLKVVSTANQDNPISEGLTPVLGLDVWEHAYYLKYHNVRPDYIEAFFN-LVNWDKVNELYAKAK 206          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 63/190 (33.16%), Postives = 84/190 (44.21%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVVI-ASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL---IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 840
            YV+NLN  I      D  SLE+++   S    D+  A  NN     NH  FW                 +   I ++FGS              +FGSGWAWLV                  ++   L VV T N  NP+    +P+L +DVWEHAYYL + N RPDYI  F + LV+W+ V++    AK
Sbjct:   35 YVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVV-----------------DEAGKLKVVSTANQDNPISEGLTPVLGLDVWEHAYYLKYHNVRPDYIEAFFN-LVNWDKVNELYAKAK 206          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_HAEDU (Superoxide dismutase [Mn] OS=Haemophilus ducreyi GN=sodA PE=3 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 65/197 (32.99%), Postives = 85/197 (43.15%), Query Frame = -1
Query:  283 AYVDNLN----KQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVW------DYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 843
            AYV+N N    K     E   G  L+D+      K   +   NN     NH  FW                 +  RDFGS            AT+FGSGWAWLV +                  +  L VV T N  +P++          P+ T+DVWEHAYYL +QNRRPDYI  F + +V+W+  S+R E  +A
Sbjct:   34 AYVNNSNALLEKHPELLEKCPGALLKDLTQVPAEKRTAVR--NNLGGHVNHTLFWKGLKTGTTLQGALKDAII--RDFGSVEAFQAEFEQAAATRFGSGWAWLVLE------------------EGKLAVVSTANQDSPIMGKDVAGVSGYPIFTLDVWEHAYYLHYQNRRPDYIKAFWN-VVNWDEASRRFEEKQA 207          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_PASHA (Superoxide dismutase [Mn] OS=Pasteurella haemolytica GN=sodA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.315e-16
Identity = 54/155 (34.84%), Postives = 69/155 (44.52%), Query Frame = -1
Query:  283 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 729
            NN     NH  FW                  IERDFGS             T+ GSGWAWLV +                  +  L VV T N  NPL+          P+L +DVWEHAYYL++QNRRPD+I  F + +V+W+  ++R E   A
Sbjct:   74 NNVGGHVNHTLFWKGLKTGTTLQGALKEA--IERDFGSVEAFQSEFEKAATTRVGSGWAWLVLE------------------EGKLAVVSTANQDNPLMGKEVAGVSGYPILVLDVWEHAYYLNYQNRRPDFIKAFWN-VVNWDEAARRFEEKVA 207          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.499e-15
Identity = 58/188 (30.85%), Postives = 81/188 (43.09%), Query Frame = -1
Query:  286 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLL--PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR-LESAK 840
            YV+ LN  I GTE  +   +E +V A     + L     N+     NH  FW                  I    G              T+FGSGWAWL                      K+L+V  + N  +PL++  +P+  +DVWEHAYYL +QNRRP+YI  F + ++ W  V +R LE+ K
Sbjct:   35 YVNGLNAAIEGTEWAEWP-VEKLVGAVKQLPESLRGAVTNHGGGHANHSLFWTVMSPQGGGEPHGQLAQAIASQLGGFDAFKEAFTKAALTRFGSGWAWLSVTP-----------------QKTLVVESSGNQDSPLMFGNTPIFGLDVWEHAYYLKYQNRRPEYIGAFYN-VIDWAEVERRYLEALK 203          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 53/187 (28.34%), Postives = 79/187 (42.25%), Query Frame = -1
Query:  289 AYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 843
            AYV NLN  +       G  +E ++  +A+  +       NN     NH  FW                  I+  FG               +FGSGWAWLV                  +    L V+ TPN  NP++  ++P++ IDVWEHAYYL +QNRR DY+    + +++W+   +  + A
Sbjct:   36 AYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLV-----------------KDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRADYLQAIWN-VLNWDVAEEFFKKA 204          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 53/187 (28.34%), Postives = 79/187 (42.25%), Query Frame = -1
Query:  289 AYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 843
            AYV NLN  +       G  +E ++  +A+  +       NN     NH  FW                  I+  FG               +FGSGWAWLV                  +    L V+ TPN  NP++  ++P++ IDVWEHAYYL +QNRR DY+    + +++W+   +  + A
Sbjct:   36 AYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLV-----------------KDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRADYLQAIWN-VLNWDVAEEFFKKA 204          
The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODM_ECOLI6.278e-1734.52Superoxide dismutase [Mn] OS=Escherichia coli (str... [more]
SODM_PASMU8.199e-1735.08Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]
SODM_LISIV1.071e-1632.09Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_LACLM4.069e-1633.16Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA4.069e-1633.16Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_HAEDU4.069e-1632.99Superoxide dismutase [Mn] OS=Haemophilus ducreyi G... [more]
SODM_PASHA5.315e-1634.84Superoxide dismutase [Mn] OS=Pasteurella haemolyti... [more]
SODM_PSEPU4.499e-1530.85Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]
SODM_THET87.674e-1528.34Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET27.674e-1528.34Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTATATTAGTCATCCAAAAACTATTTTCAAAAAGT
AACTCATACATATACTTTGATAGGTTTTATTATACCCTGATTGTTATAAG
AAGAAACCAACACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGT
ACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAAC
ATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTT
CATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCTTTGGCTGATTCCAG
TCTTTTACTTACTGATTCCCATGATACAAGCTTATCCATGAAAACTGATA
TGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCAT
ACATCAATAGTAAGGAGCGGCGAGTAATCCCAGACAAGAGGATTGACAGC
ATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAG
GATTCACCGCATTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGC
CAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTC
AAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAATCAGTCCTAGAAGTT
CACCAGACGGCTTTCCGCCACCACCCGGTTTCATGGATTCCCAGAAGAAG
TCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCTGGAAGCAAGTCACC
CTTGTTGTAAGAAGCAATAACGACATCTTCCAATGACTTTCCATCACCAA
GCTCAGTTCCAACAATTTGCTTGTTGAGGTTATCCACATAAGC
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