CB290258

Overview
NameCB290258
Unique NameCB290258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: SCRB_BACSU (Sucrose-6-phosphate hydrolase OS=Bacillus subtilis GN=sacA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.579e-15
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  476 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNE 763
            R  FH  P    +NDPNG +++KG YH+F+Q+ P     G   WGH  ++D+++W    +A+    W+D  G ++GSA +  D +L + YTG+  +
Sbjct:   29 RQHFHIMPPVGLLNDPNGVIYWKGSYHVFFQWQPFQTGHGAKFWGHYTTQDVVNWKREEIALAPSDWFDKNGCYSGSA-VTKDDRLYLFYTGNVRD 123          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INV4_YEAST (Invertase 4 OS=Saccharomyces cerevisiae GN=SUC4 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 46/125 (36.80%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  476 RTAFHFQPQKNWMNDPNGPVFY---KGWYHLFYQYNPNGAIWG-DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSA-------------TILPDGKLMMLYTGSTNESVQVQNLAYPAD 799
            R   HF P K WMNDPNG ++Y   +G +HL++QYNPN  +WG  + WGHA S DL HW   P+A+   +  +  G ++GS              T+ P  + + ++T +T ES + Q ++Y  D
Sbjct:   28 RPLVHFTPNKGWMNDPNG-LWYDAKEGKWHLYFQYNPNDTVWGLPLFWGHATSNDLTHWQDEPVAIAPKR--NDSGAYSGSMVIDHNNTSEFFNDTVDPRQRCVAIWTYNTPES-EEQYISYSLD 148          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INV1_YEAST (Invertase 1 OS=Saccharomyces cerevisiae GN=SUC1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.623e-14
Identity = 49/125 (39.20%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  476 RTAFHFQPQKNWMNDPNGPVFY---KGWYHLFYQYNPNGAIWG-DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSA-------------TILPDGKLMMLYTGSTNESVQVQNLAYPAD 799
            R   HF P K WMNDPNG ++Y   +G +HL++QYNPN  +WG  + WGHA S DL HW   P+A +A +  D  G ++GS              TI P  + + ++T +T ES + Q ++Y  D
Sbjct:   28 RPLVHFTPNKGWMNDPNG-LWYDAKEGKWHLYFQYNPNDTVWGLPLFWGHATSDDLTHWQDEPVA-IAPKRKD-SGAYSGSMVIDYNNTSGFFNDTIDPRQRCVAIWTYNTPES-EEQYISYSLD 148          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: SCRB_SALTY (Sucrose-6-phosphate hydrolase OS=Salmonella typhimurium GN=scrB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.120e-14
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  485 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGS 754
            +H  P    MNDPNG + + G YHLFYQ+NP         W H  S DL+HW H P+A++ D+ YD  G ++GSA +  +G L + YTG+
Sbjct:   30 WHHAPVTGLMNDPNGFIEFAGRYHLFYQWNPLACDHTFKCWAHWSSIDLLHWQHEPIALMPDEEYDRNGCYSGSA-VDNNGTLTLCYTGN 118          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: SCRB_KLEPN (Sucrose-6-phosphate hydrolase OS=Klebsiella pneumoniae GN=scrB PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.769e-14
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  485 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGS 754
            +H  P    +NDPNG     G YHLFYQ+NP         WGH  S DL+HW H P+A++ D+ YD  G ++GSA    +G L + YTG+
Sbjct:   30 WHLAPVNGLLNDPNGFCQVAGRYHLFYQWNPLACDHTYKCWGHWSSADLLHWRHEPIALMPDEEYDRNGCYSGSAVEF-EGALTLCYTGN 118          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: SCRB2_VIBCH (Probable sucrose-6-phosphate hydrolase OS=Vibrio cholerae PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.769e-14
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  476 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQ 778
            R  +H  P +  +NDPNG ++++G YHLFYQ++P      D  W H  S DL+HW    +A+    W+D  GV++G A +     L + YTG+T   V  Q
Sbjct:   94 RPLWHISPPQGLLNDPNGFIYHQGEYHLFYQWHPFVCEHKDKYWVHLKSLDLVHWQWQSVALTPSDWFDSHGVFSGHA-VSHQQDLWLFYTGNTRLGVDRQ 193          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INVX_SCHPO (Putative invertase OS=Schizosaccharomyces pombe GN=SPAC8E11.01c PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.616e-14
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  476 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSA-------------------TILPDGKLMMLYTGSTNESVQVQNLAYPAD 799
            R   HF P + +MNDPNG V+  G +HLF+Q+NP G   G+  WGHAVSK+L  W  LP A+     + +M  ++GSA                   ++ P+ +++++YT +  ++ + QN+AY  D
Sbjct:    4 RPCIHFTPPEGFMNDPNGLVYSNGKWHLFFQWNPTGNQAGNQHWGHAVSKNLYKWKLLPTALAPGDDHGLM--FSGSAVIDKTNSSGFFESGFFSRKSVDPEERIVLIYT-THYDNRETQNIAYSLD 127          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: SCRB_VIBC3 (Probable sucrose-6-phosphate hydrolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=cscA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 2
Query:  431 RTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQ 778
            + A+ P+   +    R  +H  P +  +NDPNG ++++  YHLFYQ++P      D  W H  S DL+HW    +A+    W+D  GV++G A +     L + YTG+T    + Q
Sbjct:   79 KRATLPYQTALDCPYRPQWHISPPQGLLNDPNGFIYHQEEYHLFYQWHPFACEHKDKYWVHLKSLDLVHWQWQSVALTPSDWFDSHGVFSGHA-VSHQQDLWLFYTGNTRLGTERQ 193          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INV_DEBHA (Invertase OS=Debaryomyces hansenii GN=INV PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.052e-13
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  467 SWQRTAFHFQPQKNWMNDPNGPVFYK--GWYHLFYQYNPNGAIWGD-IVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGS-------------ATILPDGKLMMLYTGSTNESVQVQNLAYPAD 799
            ++ R   H  P   W+NDPNG  + K    +H +YQYNPN  IWG  + WGH+ SKDL HW    +A+      D  G+++GS              +I  D +++ +YT S  ++ Q Q++AY  D
Sbjct:   32 AYNRPLIHLTPNVGWLNDPNGLFYDKKTSVWHAYYQYNPNDTIWGQPLYWGHSSSKDLTHWEEHQVALGPQN--DDEGIFSGSIVIDYNNTSGFFDESIDKDQRVVAIYTNSIPDT-QTQDIAYSLD 155          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: SCRB_LACLA (Sucrose-6-phosphate hydrolase OS=Lactococcus lactis subsp. lactis GN=scrB PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.374e-13
Identity = 45/132 (34.09%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  359 ERLRPFTSASSAGVSEKSNRRFGARTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGS 754
            +R R + S S + +  +S R+   ++   PW +N        FH +P+   +NDPNG  ++   +HLFYQ+ P G + G   W H VS DL+H+    L +  D  YD  GV++GSA    +  L ++YTG+
Sbjct:    7 QRYRTYDSYSESDL--ESLRKLALKS---PWKSN--------FHIEPETGLLNDPNGFSYFNEKWHLFYQHFPFGPVHGLKSWVHLVSDDLVHFEKTGLVLYPDTKYDNAGVYSGSALAF-ENFLFLIYTGN 124          
The following BLAST results are available for this feature:
BLAST of CB290258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
SCRB_BACSU5.579e-1535.42Sucrose-6-phosphate hydrolase OS=Bacillus subtilis... [more]
INV4_YEAST1.243e-1436.80Invertase 4 OS=Saccharomyces cerevisiae GN=SUC4 PE... [more]
INV1_YEAST1.623e-1439.20Invertase 1 OS=Saccharomyces cerevisiae GN=SUC1 PE... [more]
SCRB_SALTY2.120e-1443.33Sucrose-6-phosphate hydrolase OS=Salmonella typhim... [more]
SCRB_KLEPN2.769e-1443.33Sucrose-6-phosphate hydrolase OS=Klebsiella pneumo... [more]
SCRB2_VIBCH2.769e-1437.62Probable sucrose-6-phosphate hydrolase OS=Vibrio c... [more]
INVX_SCHPO3.616e-1434.65Putative invertase OS=Schizosaccharomyces pombe GN... [more]
SCRB_VIBC38.056e-1432.76Probable sucrose-6-phosphate hydrolase OS=Vibrio c... [more]
INV_DEBHA1.052e-1334.65Invertase OS=Debaryomyces hansenii GN=INV PE=3 SV=... [more]
SCRB_LACLA1.374e-1334.09Sucrose-6-phosphate hydrolase OS=Lactococcus lacti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ad06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290258 ID=CB290258; Name=CB290258; organism=Citrus sinensis; type=EST; length=815bp
GCCCGTGGTTTGTTGTATAAATAGACCCCCGGTTCTCTTAACCTTTCTCC
CCATTATTCATTGAAACCAACAAATTTATCAAGCAGCAGCCCTCTAGTGC
GCCGCATACATTCGTTAATCAATGGCAGATTCTAATGTATCCTACAATCC
TCTCCCGGACGGGGAACGTCCGCGGCCAACTCGCCGGAGATCCATCGTCT
TGGTTCTATCCGGTTTGTTGGTCGTTGGTTTTTTAGTTGCATTATTATCC
GATAATGGATCTATAGCCCCTACTAACGTTATTGATAATGACAATAATAA
TGTTAATGATAATGCACAAAATGGGCTTAATGATGTGTCGTCGTCGTCGA
AAGACCCCGAGAGACTCCGGCCGTTTACGAGTGCCTCGTCGGCCGGGGTG
TCTGAGAAGTCGAACCGGCGGTTTGGTGCAAGGACGGCGTCGTATCCCTG
GACCAATAATATGCTGTCGTGGCAAAGGACGGCCTTCCACTTTCAACCCC
AAAAGAATTGGATGAATGATCCTAATGGTCCAGTGTTTTACAAAGGATGG
TACCATTTGTTCTACCAGTACAACCCAAATGGCGCAATATGGGGTGACAT
AGTGTGGGGGCATGCTGTGTCAAAGGACCTGATCCATTGGTATCACCTCC
CGTTGGCCATGGTTGCCGATCAATGGTATGATATTATGGGTGTCTGGACC
GGCTCTGCTACAATCCTACCTGATGGAAAACTTATGATGTTGTACACTGG
ATCCACCAACGAGTCTGTGCAGGTCCAAAATCTCGCATATCCTGCCGACC
CATCTGATCCTCTAC
back to top