CB290258

Overview
NameCB290258
Unique NameCB290258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: SCRB1_VIBCH (Probable sucrose-6-phosphate hydrolase OS=Vibrio cholerae GN=VC_A0655 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.374e-13
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 2
Query:  476 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQ 778
            R  +H  P +  +NDPNG ++++G YHLFYQ++P      D  W H  S DL+ W    +A+    W+D  GV++G A +     L + YTG+T   V  Q
Sbjct:   94 RPLWHISPPQGLLNDPNGFIYHQGEYHLFYQWHPFACEHKDKYWVHLKSLDLVDWQWQSVALTPSDWFDSHGVFSGHA-VSHQQDLWLFYTGNTRLGVDRQ 193          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: SCRB_PEDPE (Sucrose-6-phosphate hydrolase OS=Pediococcus pentosaceus GN=scrB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.795e-13
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  476 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGS 754
            R   H QP    +NDPNG  ++ G +HLFYQ  P G + G   W H  SK+L+ W+   LA+  D  YD  G +TG+A  + D +L ++YTG+
Sbjct:   33 RMQHHIQPTSGLLNDPNGFSYFDGQWHLFYQVFPFGPVHGLKSWQHVTSKNLVDWHDEGLAIRPDTPYDSHGAYTGTALPI-DDQLFIMYTGN 124          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INV2_YEAST (Invertase 2 OS=Saccharomyces cerevisiae GN=SUC2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  476 RTAFHFQPQKNWMNDPNGPVFY---KGWYHLFYQYNPNGAIWG-DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSA-------------TILPDGKLMMLYTGSTNESVQVQNLAYPAD 799
            R   HF P K WMNDPNG ++Y      +HL++QYNPN  +WG  + WGHA S DL +W   P+A+   +  +  G ++GS              TI P  + + ++T +T ES + Q ++Y  D
Sbjct:   28 RPLVHFTPNKGWMNDPNG-LWYDEKDAKWHLYFQYNPNDTVWGTPLFWGHATSDDLTNWEDQPIAIAPKR--NDSGAFSGSMVVDYNNTSGFFNDTIDPRQRCVAIWTYNTPES-EEQYISYSLD 148          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INU1_KLUMA (Inulinase OS=Kluyveromyces marxianus GN=INU1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 2
Query:  452 TNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGW---YHLFYQYNPNGAIWG-DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGS-------------ATILPDGKLMMLYTGSTNESVQVQNLAYPAD 799
            TN   S  R + HF P   WMNDPNG ++Y      +HL+YQYNP   IWG  + WGHAVSKDL  W     ++      D  G ++GS             +++ P  + + ++T S   S Q Q+++Y  D
Sbjct:   31 TNTTFSLNRPSVHFTPSHGWMNDPNG-LWYDAKEEDWHLYYQYNPAATIWGTPLYWGHAVSKDLTSWTDYGASLGPGS--DDAGAFSGSMVIDYNNTSGFFNSSVDPRQRAVAVWTLSKGPS-QAQHISYSLD 159          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: SCRB_VIBAL (Sucrose-6-phosphate hydrolase OS=Vibrio alginolyticus GN=scrB PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.592e-12
Identity = 32/94 (34.04%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  482 AFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNE 763
            +FH  P+   +NDPNG  ++ G +H+FYQ+ P G + G   W H  +KD IH+    + +  DQ YD  GV++G A ++ + ++++ +TG+  +
Sbjct:   39 SFHIAPKFGLLNDPNGLCYFNGEHHIFYQWTPVGPVHGMKYWYHLSTKDFIHFTDHGVGLHPDQDYDSHGVYSGGA-LVENNQVLLFFTGNKRD 131          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: SCRB_STRMU (Sucrose-6-phosphate hydrolase OS=Streptococcus mutans GN=scrB PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.592e-12
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  452 TNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQN 781
            TN  LS   T +H +P+   +NDPNG  ++ G ++LFYQ  P GA  G   W H  S+DL+H+      +  D  +D  G ++GSA  + D +L + YTG+  +   V++
Sbjct:   25 TNVALSPWHTTYHIEPKTGLLNDPNGFSYFNGKFNLFYQNWPFGAAHGLKSWIHTESEDLVHFKETGTVLYPDTSHDSHGAYSGSAYEIGD-QLFLFYTGNVRDENWVRH 133          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: SACC_BACL7 (Levanase (Fragment) OS=Bacillus sp. (strain L7) PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.385e-12
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 2
Query:  446 PWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSA 709
            P+ +      R  +H+ P +   +DPNG V+++G YHLF+Q            W HAVS+DLIHW  LP+A+    W D+  VW+GSA
Sbjct:  388 PYASYYTEKYRPQYHYSPIRGSASDPNGLVYFEGEYHLFHQDGGQ--------WAHAVSRDLIHWKRLPIAL---PWNDLGHVWSGSA 464          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INV_KLULA (Invertase OS=Kluyveromyces lactis GN=INV1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.385e-12
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 2
Query:  386 SSAGVSEKSNRRFGARTASYPWTNNM---LSWQRTAFHFQPQKNWMNDPNGPVFYKGW---YHLFYQYNPNGAIWG-DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATI 715
            +SA V  + +    A  + +  T+N    LS  R A H+ P++ WMNDPNG ++Y      +H++YQY P+   WG  + WGHAVSKDL  W    +A   +  ++  G ++GS  I
Sbjct:   12 ASAAVIHRRDANISAIASEWNSTSNSSSSLSLNRPAVHYSPEEGWMNDPNG-LWYDAKEEDWHIYYQYYPDAPHWGLPLTWGHAVSKDLTVWDEQGVAFGPE--FETAGAFSGSMVI 125          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: FRUA_STRMU (Fructan beta-fructosidase OS=Streptococcus mutans GN=fruA PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 2
Query:  476 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVAD 670
            R  +H+  +  W NDPNG V+Y G YHLF+Q+  +   WG + W HA S DLIHW   P+A   D
Sbjct:  444 RDQYHYSVKDGWANDPNGLVYYNGVYHLFHQFY-DDTKWGPMHWAHATSTDLIHWKEEPIAFYPD 507          
The following BLAST results are available for this feature:
BLAST of CB290258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
SCRB1_VIBCH1.374e-1336.63Probable sucrose-6-phosphate hydrolase OS=Vibrio c... [more]
SCRB_PEDPE1.795e-1340.86Sucrose-6-phosphate hydrolase OS=Pediococcus pento... [more]
INV2_YEAST6.820e-1336.00Invertase 2 OS=Saccharomyces cerevisiae GN=SUC2 PE... [more]
INU1_KLUMA1.163e-1235.34Inulinase OS=Kluyveromyces marxianus GN=INU1 PE=1 ... [more]
SCRB_VIBAL2.592e-1234.04Sucrose-6-phosphate hydrolase OS=Vibrio alginolyti... [more]
SCRB_STRMU2.592e-1235.45Sucrose-6-phosphate hydrolase OS=Streptococcus mut... [more]
SACC_BACL73.385e-1239.77Levanase (Fragment) OS=Bacillus sp. (strain L7) PE... [more]
INV_KLULA3.385e-1235.90Invertase OS=Kluyveromyces lactis GN=INV1 PE=3 SV=... [more]
FRUA_STRMU7.540e-1246.15Fructan beta-fructosidase OS=Streptococcus mutans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290258 ID=CB290258; Name=CB290258; organism=Citrus sinensis; type=EST; length=815bp
GCCCGTGGTTTGTTGTATAAATAGACCCCCGGTTCTCTTAACCTTTCTCC
CCATTATTCATTGAAACCAACAAATTTATCAAGCAGCAGCCCTCTAGTGC
GCCGCATACATTCGTTAATCAATGGCAGATTCTAATGTATCCTACAATCC
TCTCCCGGACGGGGAACGTCCGCGGCCAACTCGCCGGAGATCCATCGTCT
TGGTTCTATCCGGTTTGTTGGTCGTTGGTTTTTTAGTTGCATTATTATCC
GATAATGGATCTATAGCCCCTACTAACGTTATTGATAATGACAATAATAA
TGTTAATGATAATGCACAAAATGGGCTTAATGATGTGTCGTCGTCGTCGA
AAGACCCCGAGAGACTCCGGCCGTTTACGAGTGCCTCGTCGGCCGGGGTG
TCTGAGAAGTCGAACCGGCGGTTTGGTGCAAGGACGGCGTCGTATCCCTG
GACCAATAATATGCTGTCGTGGCAAAGGACGGCCTTCCACTTTCAACCCC
AAAAGAATTGGATGAATGATCCTAATGGTCCAGTGTTTTACAAAGGATGG
TACCATTTGTTCTACCAGTACAACCCAAATGGCGCAATATGGGGTGACAT
AGTGTGGGGGCATGCTGTGTCAAAGGACCTGATCCATTGGTATCACCTCC
CGTTGGCCATGGTTGCCGATCAATGGTATGATATTATGGGTGTCTGGACC
GGCTCTGCTACAATCCTACCTGATGGAAAACTTATGATGTTGTACACTGG
ATCCACCAACGAGTCTGTGCAGGTCCAAAATCTCGCATATCCTGCCGACC
CATCTGATCCTCTAC
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