CB290301

Overview
NameCB290301
Unique NameCB290301
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB290301 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = -2 
Query:  502 VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL-KSIGMIEEVP-----GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 867
            + G+V NW+ V M       +DP  + A+ V+ + GHD       VK + + IG     P     G +++  +  E A++  TREV P + V GM    + GAPRMGP FG M++SG++ A + ++ L
Sbjct:  137 ITGLVLNWSSVEM---AGLHVDPLTVRARAVIDATGHDCEI----VKVVERKIGPELNTPDGRIQGERSMWADVGEAALIENTREVYPNLYVAGMASNAVYGAPRMGPIFGGMLVSGRRVAEMIIEKL 257
The following BLAST results are available for this feature:
BLAST of CB290301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
THI4_METTH9.419e-1133.59Putative thiazole biosynthetic enzyme OS=Methanoba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01af08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290301 ID=CB290301; Name=CB290301; organism=Citrus sinensis; type=EST; length=880bp
TTTTTTTTTTTTTTACAAAACAGAGTAAGCTCAGATCTTCCTCTTTGATC
TTAATCACATCAGCACTGTCCCATTGGCTGATGCCTCAAGTTATAAACAT
ACAAAGCAAAGAAAAGGGAACAGCCCAAGGGCAGTCTTACACATAATACA
GATAACAAGGACTAGATACGCAACTGCAAATTCACCCCCGAAAAACTCAC
AACGGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTGCATGAT
GGACCGGAAACAAACACTTTATTCACAAAACCTCACAACATCATCTCATT
ATTCGCATCAACCATCCATCACAACCACCTAAATACAACTACTTTTTTGC
CAGAGTTTATTTGCATGCACACAGCTGATGAGTGATGATGCCTGTTATTA
TCAAATTAACCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAG
CTCAGGGTGAACACCTCCCACATATGTACCGTCTAATGCATTCGGCTGGC
CCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATT
GCTCCAAATGTTGGCCCCATTCTAGGAGCACCATCAATCTCGGCAACTTC
CATGCCGGTAACTATCATACCAGGCACAACCTCCCTGGTCAGCCTCACAA
TAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCC
TCAATCATTCCGATACTCTTCAACCTCTTTACTCCAGTGGCCCCAAAAGG
CCCATCATGGCCACAAGAGCTCACAACCACCTTCGCTTCCATTACATTGG
GATCCATGCAAGACTGTGTATCGTGATTCATTGACACCAACGCCCAGTTG
GTCACCACACCACCAACTCTGCCGCCTTTG
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